Query= MSMg01no261_j16.b1 MSMg01no261_j16.b1 CHROMAT_FILE:
MSMg01no261_j16.b1 PHD_FILE: MSMg01no261_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:02 2005
(539 letters)
>mm_chr14_68678443_68679380
Length = 938
Score = 812 bits (420), Expect = 0.0
Identities = 437/446 (97%), Gaps = 7/446 (1%)
Strand = Plus / Minus
Query: 4 gaattcattaatt---cttttctctgtcttatttctacaatgtataaatccttctttctt 60
||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaattcattaattcgcc----ctctgtcttatttctacaatgtataaatccttctttctt 391
Query: 61 tcagcatatgaccctttctgtgttactagatttagtttgttaataattttattaagagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcagcatatgaccctttctgtgttactagatttagtttgttaataattttattaagagat 331
Query: 121 tcctgcttctgtgtatttaagcaatgttgatcctttgtcattttttttctgggttttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcctgcttctgtgtatttaagcaatgttgatcctttgtcattttttttctgggttttggt 271
Query: 181 ttcctcttactgatgtgttagagggtttttttaaaaattacatttaatttaagtgttttg 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 ttcctcttactgatgtgttagagggtttttttaaaaatcacatttaatttaagtgttttg 211
Query: 241 gattaagttatttattattttatgtataagtatgcatctgaatgcatatgcgtgtaccac 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 210 gattaagttatttattattttatgtataagtatgcacctgaatgcatatgcgtgtaccac 151
Query: 301 atatatgtaggtgcccatggaggtggaagagggtttcagatctcctggaactggagttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atatatgtaggtgcccatggaggtggaagagggtttcagatctcctggaactggagttat 91
Query: 361 agccatttatgagctgcccagtatgtgggctgaaaacctaacccaagttcccaaagaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 agccatttatgagctgcccagtatgtgggctgaaaacctaacccaagttcccaaagaaga 31
Query: 421 ggaggcacccttagccccaccctggg 446
||||||||||||||||||||||||||
Sbjct: 30 ggaggcacccttagccccaccctggg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_j16.g1 MSMg01no261_j16.g1 CHROMAT_FILE:
MSMg01no261_j16.g1 PHD_FILE: MSMg01no261_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:02 2005
(510 letters)
>mm_chr14_68511649_68512558
Length = 910
Score = 978 bits (506), Expect = 0.0
Identities = 509/510 (99%), Gaps = 1/510 (0%)
Strand = Plus / Plus
Query: 1 ataaccattatggaggggagcatggcagcaggcaggcaggcaggcaggcacggcagacag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 ataaccattatggaggggagcatggcagcaggcaggcaggcaggcaggca-ggcagacag 260
Query: 61 gcatggcattggagcattagctgagaatatacatctgatccacaaacaggaagaagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatggcattggagcattagctgagaatatacatctgatccacaaacaggaagaagagag 320
Query: 121 acaaagtatgggcctggcttgggcccaccaccagtgaagcatctcttcccacaagaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaagtatgggcctggcttgggcccaccaccagtgaagcatctcttcccacaagaccac 380
Query: 181 acctcctaatccttcccaacagttcacccactgcaaacattcaaatgtaggagcctatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctcctaatccttcccaacagttcacccactgcaaacattcaaatgtaggagcctatgg 440
Query: 241 agtagggggtggaggggagacattcttattcaaactaccacaccaatgcaacctgctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagggggtggaggggagacattcttattcaaactaccacaccaatgcaacctgctgtg 500
Query: 301 tgacatggcctgcccaggtgcctcatggggatccacactgccttcaaccagtcttcacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacatggcctgcccaggtgcctcatggggatccacactgccttcaaccagtcttcacaa 560
Query: 361 tggcaaagtctatttgctcaagggctttttggcccatggggcatccccaagagtcaccag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcaaagtctatttgctcaagggctttttggcccatggggcatccccaagagtcaccag 620
Query: 421 aggaggacttgttgtatacatcaatttctgtttgaaactgttaagacttttcttccatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaggacttgttgtatacatcaatttctgtttgaaactgttaagacttttcttccatgc 680
Query: 481 tgaatttcatgaggaagttaggaatattgg 510
||||||||||||||||||||||||||||||
Sbjct: 681 tgaatttcatgaggaagttaggaatattgg 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
