BAC Information

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BAC

Clone NameMSMg01-263D15
Chromosome14 (Build37)
Map Location 96,761,193 - 96,885,474
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D15.T7 (MSMg01no263_d15.b1)MSMg01-263D15.TJ (MSMg01no263_d15.g1)
ACCAG405109AG405110
length750732
length of high quality
(start - end)		319 (49 - 367)282 (79 - 360)
definitionCHROMAT_FILE: MSMg01no263_d15.b1 PHD_FILE: MSMg01no263_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:05 2005CHROMAT_FILE: MSMg01no263_d15.g1 PHD_FILE: MSMg01no263_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,761,193 - 96,761,507)(96,885,193 - 96,885,474)
sequence
CACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTCCCAAGTGTTTAATGAATCAAACTTGGCAAAAAGGAAAG
TGTTGTGCCAACCCACTAATAATTTAGAAAATGTGTTGTACTATGTACTA
TGGTAATTGTTCGAATCTGCAAATAAGAGTCAAATACGTATACTGAGTGG
TCAACATATTAAAAGCTACAGATTGTTCAATAACAATGAAACTTCACGAA
GTGCCTCAAAATATAAGTAATTTTTTTTATTATTTCCCAGAATTAACCTT
GTAAAATTCAGTTTTATATGTATTGGTAGATTACTAAACATATTCACACA
AGTGCTCAAACAAATCTGTTTAACTGACTCACCTTGCTTATTTTTTATTT
TTTACAGTTCATATGCAAATTGCCCCAACATTCTAGAAAAACTAAGTCAA
TTTTAAACAATGAACAATGAATAAGGCACAAAAATCAGTCTTTGACGACT
CAGTATGTTATATTGAGTCTAGAGTTTATTGTCTATTATATTCTCTAAGA
TTAAAATGATTATTCTGCTAATGTGCTTGCATAATTCATGCCACTTGAAT
TAAACCCGCTATAAAAATGAAGCACTGAATTACTTTTAATTATCTTAAAG
AACTCTGTCGTTATTTCACCGCCTAAGTCTTTTTTCCCTTCTTTTTCCCT
TTTATTTTTTCCCCCCCTCATCCTCCCCTCCTTTCTCTCTACCTTTTCTC


CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGAGAGTAAATATAAAGGTG
TAACTAAGATTAATACGCATCTCTCCTTTCTTAAGAAATAGACACAATAT
TTCTCAATTTGTCTGCAGTTTTCTTATTTTATATGACAATTCTGTTGGTT
ATTTCAGTTAGGATCTGCAGCACACTCCCGGACAGACCACGATGGAGACA
GGTTACATGTGGGAGATTTTATTGGTAGAGGAGGCCTCTGAGGAGTTAAG
CGGGAAGAAGAAGAGAAGGGGGCCGTGGGTCAGGGTACTCATCTTTCATC
TGGGTTGTGATGTTTGTCATACATGCGCCCAGCGGTATGCGACAGGTGTC
ATGGCAAGAGACACAGCAACAGCATTGTACCCAGAGATGCAGTGTCTTGT
GCTGGGTGCAGGAGCTTGTTATAAAGAGTTTCTTTCTATACATGGATACA
CCTGATGCTAATACATCTCTCATTTATTTTAAAGTTGCAAACTGCTTTGC
TTATGAATTTGAAAATAGTAATTGAAATTTATACTAATAACTTCGAGTCA
CTGAGTCCTCTACTAGNTCTTTTTCATGAGATTTTAATCAGGATTGTTGT
AACAGGCGACTCTTTCTTTGGTTCTTACATTCACTCTTTAGCAGTCACTT
TACTTGCATGGATGCTTTAAATAAACCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d15.b1 MSMg01no263_d15.b1 CHROMAT_FILE:
MSMg01no263_d15.b1 PHD_FILE: MSMg01no263_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:05 2005
         (319 letters)



>mm_chr14_96760989_96761707
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcccaagtgtttaatgaatcaaacttggcaaaaaggaaagtgttgtgccaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcccaagtgtttaatgaatcaaacttggcaaaaaggaaagtgttgtgccaac 264

                                                                       
Query: 65  ccactaataatttagaaaatgtgttgtactatgtactatggtaattgttcgaatctgcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccactaataatttagaaaatgtgttgtactatgtactatggtaattgttcgaatctgcaa 324

                                                                       
Query: 125 ataagagtcaaatacgtatactgagtggtcaacatattaaaagctacagattgttcaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataagagtcaaatacgtatactgagtggtcaacatattaaaagctacagattgttcaata 384

                                                                       
Query: 185 acaatgaaacttcacgaagtgcctcaaaatataagtaattttttttattatttcccagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaatgaaacttcacgaagtgcctcaaaatataagtaattttttttattatttcccagaa 444

                                                                       
Query: 245 ttaaccttgtaaaattcagttttatatgtattggtagattactaaacatattcacacaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaccttgtaaaattcagttttatatgtattggtagattactaaacatattcacacaag 504

                          
Query: 305 tgctcaaacaaatct 319
           |||||||||||||||
Sbjct: 505 tgctcaaacaaatct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_d15.g1 MSMg01no263_d15.g1 CHROMAT_FILE:
MSMg01no263_d15.g1 PHD_FILE: MSMg01no263_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:05 2005
         (282 letters)



>mm_chr14_96884993_96885674
          Length = 682

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagagagtaaatataaaggtgtaactaagattaatacgcatctctcctttcttaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atagagagtaaatataaaggtgtaactaagattaatacgcatctctcctttcttaagaaa 423

                                                                       
Query: 61  tagacacaatatttctcaatttgtctgcagttttcttattttatatgacaattctgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagacacaatatttctcaatttgtctgcagttttcttattttatatgacaattctgttgg 363

                                                                       
Query: 121 ttatttcagttaggatctgcagcacactcccggacagaccacgatggagacaggttacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttatttcagttaggatctgcagcacactcccggacagaccacgatggagacaggttacat 303

                                                                       
Query: 181 gtgggagattttattggtagaggaggcctctgaggagttaagcgggaagaagaagagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtgggagattttattggtagaggaggcctctgaggagttaagcgggaagaagaagagaag 243

                                                     
Query: 241 ggggccgtgggtcagggtactcatctttcatctgggttgtga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggggccgtgggtcagggtactcatctttcatctgggttgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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