Query= MSMg01no263_i15.b1 MSMg01no263_i15.b1 CHROMAT_FILE:
MSMg01no263_i15.b1 PHD_FILE: MSMg01no263_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:29 2005
(238 letters)
>mm_chr14_21175879_21176516
Length = 638
Score = 420 bits (217), Expect = e-122
Identities = 233/239 (97%), Gaps = 2/239 (0%)
Strand = Plus / Plus
Query: 1 cgtacgccaccacacccggcttggtttgtttttaatgtacacgattttgatgaaattatc 60
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cgtacgccaccacgcccggcttggtttgtttttaatgtacaggattttgatgaaattatc 260
Query: 61 aaagccatgtgtgtaaagcctcagctgaaagaaaactcaagttagtacaagtttattgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagccatgtgtgtaaagcctcagctgaaagaaaactcaagttagtacaagtttattgga 320
Query: 121 cctctcctaacaccatgaaattctaattgaacatttttttttttttt--ggagacagggc 178
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cctctcctaacaccatgaaattctaattgaacattttttttttttttttggagacagggc 380
Query: 179 ctcactgtgtataacaggctgtttttcaactcatttatctgcctgcctctacctccttg 237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactgtgtataacaggctggctttcaactcatttatctgcctgcctctacctccttg 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no263_i15.g1 MSMg01no263_i15.g1 CHROMAT_FILE:
MSMg01no263_i15.g1 PHD_FILE: MSMg01no263_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:29 2005
(643 letters)
>mm_chr14_21342148_21343190
Length = 1043
Score = 1236 bits (639), Expect = 0.0
Identities = 642/643 (99%)
Strand = Plus / Minus
Query: 1 tgtttccctagcccaaaattacacttaaatataaatcaaacttagtaatcatgagtgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tgtttccctagcccaaaattacacttaaatataaatcaaacttagtaatcatgagtgatg 784
Query: 61 ctttacgatgcatattaagctatttgttttgcagctatagaatgtacagaaaaagtcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctttacgatgcatattaagctatttgttttgcagctatagaatgtacagaaaaagtcaaa 724
Query: 121 ctacagggtttccttcattaataacaattttttcggcacctaattacttagatgtctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctacagggtttccttcattaataacaattttttcggcacctaattacttagatgtctaca 664
Query: 181 ataataaaggtaagatattgttgattaaaaaaatctgtatagacaacttagtcttttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ataataaaggtaagatattgttgattaaaaaaatctgtatagacaacttagtcttttaat 604
Query: 241 ttactttaaaaataatatggggaattgtttgaaactgtccaaatctttattaaaaaaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttactttaaaaataatatggggaattgtttgaaactgtccaaatctttattaaaaaaaca 544
Query: 301 aaaacctaagatataagggaggggagagaaaaagaaataaaactcaaaatatacactcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aaaacctaagatataagggaggggagagaaaaagaaataaaactcaaaatatacactcaa 484
Query: 361 gttgtatgcagcctactctacaacttgttcctcataaagctgtttgtaaaagtgctctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttgtatgcagcctactctacaacttgttcctcataaagctgtttgtaaaagtgctctga 424
Query: 421 gttaagcacggccacagatggttttgagtcaagtactaccactgatgagttttctaagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttaagcacggccacagatggttttgagtcaagtactaccactgatgagttttctaagcc 364
Query: 481 ctctcttaaatcttcctgtataactgaatgtgttcatgtctgggtagactcgttgctctc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 363 ctctcttaaatcttcctgtataactgaatgtgttcatgtctgggtagactcgctgctctc 304
Query: 541 accatttcatttgcagtatctacttgtttacttgatcatgtttgttttatgttcaccaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 accatttcatttgcagtatctacttgtttacttgatcatgtttgttttatgttcaccaat 244
Query: 601 acaggttttcttcttgttttttccccttcttttttttcagtag 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acaggttttcttcttgttttttccccttcttttttttcagtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
