BAC Information

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BAC

Clone NameMSMg01-263J17
Chromosome14 (Build37)
Map Location 75,032,118 - 75,190,303
singlet/doubletdoublet
Overlap geneHtr2a, LOC668508, Esd, Lrch1
Upstream geneLOC100043734, EG629578, LOC629583
Downstream geneENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263J17.T7 (MSMg01no263_j17.b1)MSMg01-263J17.TJ (MSMg01no263_j17.g1)
ACCAG405380AG405381
length798735
length of high quality
(start - end)
306 (47 - 352)349 (382 - 730)
definitionCHROMAT_FILE: MSMg01no263_j17.b1 PHD_FILE: MSMg01no263_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:34 2005CHROMAT_FILE: MSMg01no263_j17.g1 PHD_FILE: MSMg01no263_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,190,002 - 75,190,303)(75,032,118 - 75,032,466)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTGCCTGATTTCTAACTCCTAAGAGTCGCAGTCTAAAGCTTA
TACTTGTCACGGTATCCCTGCCTTGCATTTGAATCTATTAAAAGGCACTC
TAGTCCGAATTCTTAACTTCCAAGGAAGAGGAAGCTAAGTTTCAAAGCCC
GGTGCTTCCACAGAGAAGCAAAGTGCATAGTTTTTGTTTGTTTGTTTTTT
TGTATCAGTGTCATGGTAAGGTTCACTTAGTGTATACTTTAGCACTGTGA
GCTTTCTTTGCTTAGCTGAAAGGTGACACTTGGAGAATGGGTTTTGTGTT
CGAGTTTCGTACTTTTTTTAATCGCCCCCCCCACGCTCCGCGTGCCTCTA
ACATTACAACCAGACAGCCCCCGCTGTTGTGAAAAATAAATCGGGAAGTT
GACGTATTCAGACCTGTAGAGAAATTTGGGATCTTGTCCTTTATTAGGCT
ACAGCGATTATAACACCCCCATCTTCACTTCAAGTTTTCCATCTGAAATC
GTCTTTCTAGCCAATTTTTCTATGCCCTTTTTTCTTTTCTCGTATCTTTT
CAAACCTCGATTTTCACACTTAATATTCTCACCATCCCCACATGTTCTAC
CCCTACCTCGTATTTTTTTGTTTCTCTTTTCCTAAAATTTATCGGTTTAA
TTTCTCCTTTTCCCCTCCACATTTTTCCCCCTTACTTTCCCTCCCCCCCA
CCCTCTTAATCTCCCCTCACCCATAATCTCCATGTCTTCATTTTTCAC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGCATCCAAAGATGTGGGG
ACAATAATGGCCTTCAAAGAGGGGCTCCTAGGCTTCTTAAGATCAAATGA
TTAATTTTGACAAGTAAAGACTATGACATTTTTACTTCAACGTCACAGAG
CCAGTCTGCTGTGATTTGGATTTGAACTGTGTCCCTCAAAGGACAATGTG
GTAAAGACTTGACCCGTAGCCATGCCCCTATTGAAAAGTAGTGAAAACCT
TTGAGAAGTAGAATTCTTGAGGCTAACTGAAGGAAGGTTAATAGTCTCCT
GATCTTGAAACTATTATAAGGCTTACCCGCGCCTCCACAACACGCTCTTA
CTGTGTGGCACTAAGCCACCACAGGCCCAAAGCAGTAGAGCCAGGTGACT
CCCCAGAAATCATCTGAAACTGAGCCATAGTAAACCTTTGCTGCTTCTAA
GTCACTTGCCTCTGGCAACTTTTGTCACCAAAAGTTAACCCCAGGTCCTA
GAAGACAGCTGACATACCAAAAGGAAGCATGCTACCTCATCCTGGAGAGC
AGAGCTGAGCTAATTTGAGATGAACAACTGAACAAGGAGAATAATTTTCT
GTGGCCTTAGAAGAAACCAAATTGAAGTCATGTTCTGAGCCATTTCAACG
GTTCCCAGTACCCCATCTGAGATATTTATAANATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_j17.b1 MSMg01no263_j17.b1 CHROMAT_FILE:
MSMg01no263_j17.b1 PHD_FILE: MSMg01no263_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:34 2005
         (306 letters)



>mm_chr14_75189798_75190503
          Length = 706

 Score =  530 bits (274), Expect = e-155
 Identities = 295/302 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgcctgatttctaactcctaagagtcgcagtctaaagcttatacttgtcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaattcatttgcctgatttctaactcctaagagtcgcagtctaaagcttatacttgtcac 447

                                                                       
Query: 65  ggtatccctgccttgcatttgaatctattaaaaggcactctagtccgaattcttaacttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 446 ggtatccctgccttgcatttgaatctattaaaaggcactctagtccgcattcttaacttc 387

                                                                       
Query: 125 caaggaagaggaagctaagtttcaaagcccggtgcttccacagagaagcaaagtgcatag 184
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 caaggaagaggaagctaagtttcaaagccctgtgcttccacagagaagcaaagtgcatag 327

                                                                       
Query: 185 tttttgtttgtttgtttttttgtatcagtgtcatggtaaggttcacttagtgtatacttt 244
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||
Sbjct: 326 gttttgtttgtttgtttttttgtctcagtgtcatggtaaggttcacttagtgtatggttt 267

                                                                       
Query: 245 agcactgtgagctttctttgcttagctgaaaggtgacacttggagaatgggttttgtgtt 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agcactgtgagctctctttgcttagctgaaaggtgacacttggagaatgggttttgtgtt 207

             
Query: 305 cg 306
           ||
Sbjct: 206 cg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no263_j17.g1 MSMg01no263_j17.g1 CHROMAT_FILE:
MSMg01no263_j17.g1 PHD_FILE: MSMg01no263_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:34 2005
         (349 letters)



>mm_chr14_75031918_75032666
          Length = 749

 Score =  644 bits (333), Expect = 0.0
 Identities = 345/349 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccacaacacgctcttactgtgtggcactaagccaccacaggcccaaagcagtagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccacaacacgctcttactgtgtggcactaagccaccacaggcccaaagcagtagagc 260

                                                                       
Query: 61  caggtgactccccagaaatcatctgaaactgagccatagtaaacctttgctgcttctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtgactccccagaaatcatctgaaactgagccatagtaaacctttgctgcttctaag 320

                                                                       
Query: 121 tcacttgcctctggcaacttttgtcaccaaaagttaaccccaggtcctagaagacagctg 180
           |||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||
Sbjct: 321 tcacttgcctctggcaacttttgtcactgaaagttaaccccaggtcttagaagacagctg 380

                                                                       
Query: 181 acataccaaaaggaagcatgctacctcatcctggagagcagagctgagctaatttgagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataccaaaaggaagcatgctacctcatcctggagagcagagctgagctaatttgagat 440

                                                                       
Query: 241 gaacaactgaacaaggagaataattttctgtggccttagaagaaaccaaattgaagtcat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacaactgaacaaggagagtaattttctgtggccttagaagaaaccaaattgaagtcat 500

                                                            
Query: 301 gttctgagccatttcaacggttcccagtaccccatctgagatatttata 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttctgagccatttcaacggttcccagtaccccatctgagatatttata 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)