Query= MSMg01no263_m01.b1 MSMg01no263_m01.b1 CHROMAT_FILE:
MSMg01no263_m01.b1 PHD_FILE: MSMg01no263_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:45 2005
(319 letters)
>mm_chr14_110682529_110683248
Length = 720
Score = 526 bits (272), Expect = e-154
Identities = 313/344 (90%), Gaps = 28/344 (8%)
Strand = Plus / Plus
Query: 4 gaattctcttagttattttccttctctttcagaatatacatacatacatattatatatgt 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaattctcttagttattttctttctctttcagaatatacatacatacatattatatatgt 236
Query: 64 atatata---------------------------tatatatgatactaaagagaaaatgg 96
||||||| ||||||||||||||||||||||||||
Sbjct: 237 atatatacatacatattatatatgtatatatatatatatatgatactaaagagaaaatgg 296
Query: 97 ttcatccaatacaattgttaaatttataaaacaatctcaatgaagtcaatacaaactcaa 156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 297 ttcatccaatacaattgttaaatttagaaaacaatctcaatgaagtcaatacaaactcaa 356
Query: 157 ctaaaatggttttcgataaaaaaaaaaaa-taaagtacctcaaagaaagacacctgacta 215
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 357 ctaaaatggttttcgataaaaaaaaaaaaataaagtacctcaaagaaagacacctgacta 416
Query: 216 tcccagggaccctccattctcccattaccttcccttcatttccatcaaactccagaacca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 417 tcccagggaccctccattctcccattaccttcccttcatttccatcaaactcctgaacca 476
Query: 276 tacagtaatccttcctgccctgacccatctttcttactctctga 319
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tacagtaatccttcctgccctgacccatctttcttactctctga 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_m01.g1 MSMg01no263_m01.g1 CHROMAT_FILE:
MSMg01no263_m01.g1 PHD_FILE: MSMg01no263_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:45 2005
(660 letters)
>mm_chr14_110875502_110876561
Length = 1060
Score = 1118 bits (578), Expect = 0.0
Identities = 629/652 (96%), Gaps = 13/652 (1%)
Strand = Plus / Minus
Query: 10 gaaggagttggtatgctactcggggtaggtatgtgcagaggcctaagcggacacttcact 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 gaaggggttggtatgctactcggggtaggtatgtgcagaggcctaagcggacacttcact 956
Query: 70 gattcctattaacaagtaaatttcatggaacagaaaagatttttttctctgtttttggca 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gattcctattaacaagtaaatttcatggaacagaaaagatttttttctctgtttttggca 896
Query: 130 tttaagtttttccccttaaatagatgtccagaaagaaaaaagatagcggctttataaaat 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tttaagtttttccccttaaatagatgtccagaaagaaaaaagatagcggctttataaaat 836
Query: 190 gagtgtatgtgtatgtatatccacacacattaatatttacatttatatatgtatatgtac 249
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 gtgtgtatgtgtatgtatatccacacacattaatatttacatttatatatgtatatgtac 776
Query: 250 acacacacattttatatatatatatatatgtatatgagagactgatcaatggtcatgttt 309
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 775 acacacacattttatatatatatat----gtatatgagagactgatcaatggtcatgttt 720
Query: 310 tctctttcttcctctcactcttgtagactctcctctttacaaatttcacacagactactc 369
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 719 tctctttcttcctctcactcttgtagactctcctctttacaaatttctcaccggctactc 660
Query: 370 ttcattttgatttgtgttactctctgccttctaggaagcccctgttttcagacca-tcct 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 659 ttcattttgatttgtgttactctctgccttctaggaagcccctgttttcagac-agtcca 601
Query: 429 gttaacttactatgtaccatattccttttcattttctattaacaatatttatattaccag 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gttaacttactatgtaccatattccttttcattttctattaacaatatttatattaccag 541
Query: 489 atattttacataaactttgaaattagttggatagtctgactattgtttagaataaggaat 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atattttacataaactttgaaattagttggatagtctgactattgtttagaataag---- 485
Query: 549 aagcacagaagatggtattgaagaacacatctgatatagacatgtattctacagttttta 608
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 484 ---cacagaagatggtattgaagaacacatcagatatagacatgtattctacagttttta 428
Query: 609 aacagttaatgactattgttgaacctcaatattttatttctacaagcaggtc 660
| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 427 accagttaatgactattgctgaacctcaattttttatttctacaagcaggtc 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
