BAC Information

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BAC

Clone NameMSMg01-264C14
Chromosome14 (Build37)
Map Location 104,394,522 - 104,394,811
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C14.T7 (MSMg01no264_c14.b1)MSMg01-264C14.TJ (MSMg01no264_c14.g1)
ACCAG405786AG405787
length819745
length of high quality
(start - end)
39 (173 - 211)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no264_c14.b1 PHD_FILE: MSMg01no264_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005CHROMAT_FILE: MSMg01no264_c14.g1 PHD_FILE: MSMg01no264_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCATGCCCGAGGTGGCGCGGNAANNCA
GCTTTTTTTCCCATAAAAAAGAAGAAAAGANGGCANNAGANNAAAGCCCA
GAACNNACATTGGGCTTTTCTCACCGCACTGACATNNCATCCAAGCCTGG
GTCTTGCACAATGGTATATNNATCAAAATATATAGTTCAGATGGCAGAGC
ANTTCCCCATNAAAACNAAAGTCCTAACTTGGGCTTCTATCTAATTNAAA
AATGGAAGTTTCCTTTGACTATTATATAGATAACATNAGTGGAATTTATN
AGGCAGAAACGCAGAACNNACTCAGTCAAAANAGTTAGCCCTACATTTTT
TTTTTTTAATGCAGGNNNNNNGCCAANCACATGGGCCAAGAANCTATTTT
TCTTTTTTTTNCCCCNNNACCCCNNNNCCCCNAGNNGGNATANTGGGNNT
NNNNNNNNGNNNNNNCNNGANNNNACGAACNGNNNGAGNNCCGAAACAGG
GAGGGGGGGGGAGGAGAAGCAAGNNCACANNNNGGAGCACACANACAAAA
GGANNCCCAGAACCNNNGGGACCCACAACANGGGCAACAGNNCAGNGGGG
AGCAGCGACACCAGCACCCCCAGCGAAGGGAAGGAAGGGACANGGCACNG
GGGGCCCNCCCCACGCACGNCCCCCGGCCGANCCAAACACGCAGGAGGCA
CCANNNCCCGGCACACCAGCAGGGGNNGAAACAAAAAATTATTTTGAGAT
TTGCATTATCATTACAAGCTAGTACCCGAACAACAGCGCAGACCAGATGA
AACACTTACTGTACTGTCN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACCAATGAAAACAAATCACATT
TGCTTGGAATGAATACACAGTATTCTGAGAAAGTAGACAAAAAAATATAA
CTTTATCTCAGTCCGTACAACTACTGGGCTTTTAATTGTAGCTATTTGAG
AGTCAACAATAGTTCTGTGGACAGCACTTGCTGAACTTGGGAGTCCTTGT
AGTGTTTCATTGAATTTACACAAGATAAATTTACAAAATGTTCTTCACAT
ATATACCTATTTAAAGAATTGTCTATGTTGTAATTTCATAAACAAAGTAT
CCCAGCTAGAAAGATCNCGTGNATACCATATCANAACCTACAGGTCAGGG
AGTGTAGNAGGAAAAGTGTAGGAGTGACAAATATAACAACTTAACATCTC
CTGAAATGAATCTTTTCATTTCAAATCTTTCTAACCATGTCTTTGCAACT
CATCTTTATCTCACCTACGTTTTCAGCCATAAGCTTTTCCTTTCTCTGCC
TCCTTGAACACACGAATCATAATGATAGTAACGCCCCACTGTAATAATAC
TCTAATAATACTTTTGCCTTTGGGGCTGTTTCATCCACAGGGGTTTCTTC
TTCGTGAGATGCGGTTGCTTTTGTTTATGGTGAATAATAACTTTAAAAAA
ATCTGGACTTCTTTAATCTTACCGCTCTGTTCAAAAGAATTGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c14.g1 MSMg01no264_c14.g1 CHROMAT_FILE:
MSMg01no264_c14.g1 PHD_FILE: MSMg01no264_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
         (289 letters)



>mm_chr14_104394322_104395012
          Length = 691

 Score =  472 bits (244), Expect = e-137
 Identities = 278/290 (95%), Gaps = 2/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccaatgaaaacaaatcacatttgcttggaatgaatacacagtattctgagaaagtag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaccaatgaaaacaaatcatatttgcttggaatgaatacacagtattctgagaaagtag 260

                                                                       
Query: 61  acaa--aaaaatataactttatctcagtccgtacaactactgggcttttaattgtagcta 118
           ||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 261 acaaacaaaaatatgactttatctcagtccttacaactactgggcttttcattgtagcta 320

                                                                       
Query: 119 tttgagagtcaacaatagttctgtggacagcacttgctgaacttgggagtccttgtagtg 178
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tttgagagtcaacaatagttctggggacagcacttgcagaacttgggagtccttgtagtg 380

                                                                       
Query: 179 tttcattgaatttacacaagataaatttacaaaatgttcttcacatatatacctatttaa 238
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tttcattgaatttacacaagataaattaacaaaatgttcttcacatatatacctatttaa 440

                                                             
Query: 239 agaattgtctatgttgtaatttcataaacaaagtatcccagctagaaaga 288
           ||||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct: 441 agaattgtctatggtggattttcataaacaaagtatcccagctagaaaga 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space:   190960
Effective search space used:   190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)