BAC Information

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BAC

Clone NameMSMg01-264G07
Chromosome14 (Build37)
Map Location 23,634,835 - 23,635,174
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneVdac2, Comtd1, Zfp503, EG665075, EG435392, LOC665068
Downstream geneKcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G07.T7 (MSMg01no264_g07.b1)MSMg01-264G07.TJ (MSMg01no264_g07.g1)
ACCAG405952AG405953
length7271,101
length of high quality
(start - end)
345 (383 - 727)---
definitionCHROMAT_FILE: MSMg01no264_g07.b1 PHD_FILE: MSMg01no264_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:33 2005CHROMAT_FILE: MSMg01no264_g07.g1 PHD_FILE: MSMg01no264_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATACCCAGCGGGACCCTCATGGTGGAAGGAGAGAACTCACTGCTA
CAAGCTGTTTTCTGTTCCACGTGTATATAGCAAGATACATGTTCAAACAT
GTACATCACACACACACACACACACACACACACACAGCCACATGCACCAA
TGAATACAATTTTTTAAGAATTAAAAACTTATTATCCAGACACTTACACA
TCAGTGCTTGCTGTGGCATTACTCACAGTAGCTAAGTTATAGGAACTACC
TATCTGTCCAACAGCATATTTAACAGAGGAAGAAAGCATGGAGCACTTGC
ACAATGTATTATTTCACGCCCCCACCCCCCCATGAAGTTACACCATTAAC
CGGGAAATGGATGCAACTGAAATAGATACAATAAGTGAATAAGTCAGCCT
CAGAAAGATACGTACTGCATGTTTTCTCTTCTTTGTGGATCGCAAGGTTT
GTAAAGATACAGACAATCATATATGTACAGATGGTGTGCAAGTACAAGAG
AAGAGAAACTCACTAGTGGAACAGACCAAGGGGAGGATCGATGTGAGAAA
GGGGGTGTGCTCAGTGTGCGTCATCCACTTCCACAGAAATGGCCTATGTG
ACACAGAACTAAGTGTAATAAAAAATAACCAGGTGAATTTAAAATAAAAA
AAGTGACTAAGGTACGAGGCATCTTTG
GTGATTGGGGGGGTTGTGTGGGTTATAGATAAATATATATAAAAGATAAA
AATTGAGAGAAGGGAATTAGAGATGAGAAGAAAAAATAGACTGAATTATA
CAAAAGATGAGAGAGATACTGGTAGGAGGGTTGATGGGAGAATATAGGGG
NTTATATGGAGAAGGGATGAGGTGAGTGGGAGGAGGGGAGACNAGAATTT
TTGAGCGGGAAGATAGAGAGGGGAGAAGAGGAGAAGATAGAAAAGGGATA
TAATAGAGATGAATGTTAGGAAATAAAAGATGGAAGTGTGAAGAGGAGTG
TAATGAGGAAGGAGGAGAGAAAGGGGAGAGAAGGAGGAGAGGAGGGGGAG
GAGAGGGGGGGAGGGGGGAGAGAGGGGAGAGGGGGGGGGGGGAGGGGGGT
GAAGAGTAGAGGGAGAGATGTATGGAAGAGGTAGAAGAAGAGAAGAGGAG
AAGAGGAGAGGAAGAGATAGTTATATTATTAGGAGAAAAGAAGGAGGAGA
GAAGAGGGAGGACAGGAAAGAGAGGGATTTTGTGGTGANTTTTTGGGAAG
GAGGAGGGAGAAGGATGAAGAAATGGGGAGTAAAGGAAGAAAGGGGGTAG
AAAAAATACAAAAAGAAAATAATAAAAAAGAAAGAAAAAAGTGTGTGGTG
AGGGGGAGGGGGAGAAGAAAATAAAAAAAGGTGTATATGAGGGAGGAATA
TGGGAGATAAAGAAAAAAGATGAGGAGGTGTGGAGAGAGGAGGAGAAAGA
GAGTGAGAGAGGGGGGAAGGGAATAGTAATGGTGAGAGGGAGAGATAGAA
GTAATAGAAGTGAAGAGGAGAGATAGAAGTGAATAAGGAAGGAGAGAGGA
GAAGGATAAGAGGGAAGAGTGAAGGAGGTGGGAAATGAGAGATAGTGATG
AGGGAAGTGATAGTGAATAGAAAGAGAGAATTGATAATAAGAATAAAGAG
GGGAGAGGAGAATATAGTTGAGAAAAATAGATAAATAGATAGTGATGTGA
GGGAGGAGAGAGGTGAATGATATAATATAGATAAGGGTGGAGGGAAGAGT
TGATAATGAAGTAGGGTTAGTAGGAGGAAGATGAGGGAGAATAGGAGGAG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g07.b1 MSMg01no264_g07.b1 CHROMAT_FILE:
MSMg01no264_g07.b1 PHD_FILE: MSMg01no264_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:33 2005
         (345 letters)



>mm_chr14_23634528_23635267
          Length = 740

 Score =  582 bits (301), Expect = e-170
 Identities = 332/345 (96%), Gaps = 5/345 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagttacaccattaaccgggaaatggatgcaactgaaatagatacaataagtgaataa 60
           ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct: 647 tgaagttacaccattaaccgggaaatggatgcaactgaagtagctacagtaagtgaataa 588

                                                                       
Query: 61  gtcagcctcagaaagatacgtactgcatgttttctcttctttgtggatcgcaaggtttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtcagcctcagaaagatacgtactgcatgttttctcttctttgtggatcgcaaggtttgt 528

                                                                       
Query: 121 aaagatacagacaatcatatatgtacagatggtgtgcaagtacaagagaagagaaactca 180
           |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||
Sbjct: 527 aaagatacagacaatcatatatgtacagatggtgtgcaagtac-----aagagaaactca 473

                                                                       
Query: 181 ctagtggaacagaccaaggggaggatcgatgtgagaaagggggtgtgctcagtgtgcgtc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctagtgcaacagaccaaggggaggatcgatgtgagaaagggggtgtgctcagtgtgcgtc 413

                                                                       
Query: 241 atccacttccacagaaatggcctatgtgacacagaactaagtgtaataaaaaataaccag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 412 atccacttccacagaaatggcctatgtgacacagaactaagtgcaataaaaaataaccac 353

                                                        
Query: 301 gtgaatttaaaataaaaaaagtgactaaggtacgaggcatctttg 345
            |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 atgaatttaaaataaaaaaagtgactaaggtacaaggcatctttg 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 740
Length adjustment: 9
Effective length of query: 336
Effective length of database: 731
Effective search space:   245616
Effective search space used:   245616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)