Query= MSMg01no264_n02.b1 MSMg01no264_n02.b1 CHROMAT_FILE:
MSMg01no264_n02.b1 PHD_FILE: MSMg01no264_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:07 2005
(676 letters)
>mm_chr14_104224210_104225287
Length = 1078
Score = 1239 bits (641), Expect = 0.0
Identities = 666/675 (98%), Gaps = 2/675 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttgtcaccagtggatatctggtaacccatagtgatgtacagttctgaaaacca 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ggaattcttgtcaccagtgaatatctggtaacccatagtgatgtacagttctgaaaacca 957
Query: 64 aacttgtaaatttccaattacctataacatgcttagtttattttttcccaaaaataaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 aacttgtaaatttccaattacctataacatgcttagtttattttttcccaaaaataaatt 897
Query: 124 taaaaaaatcattaatttcaccatgagggcttggttatcatggccgcacgtggtccagcc 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 896 taaaaaaatcattaatttcaccacgagggcttggttatcatggccgcacgtggtccagcc 837
Query: 184 cataccacttcgtacagacgt--agtctttttatttcccttgaccacattctgagcaaca 241
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 836 cataccacttcgtacagacgtacagtctttttatttcccttgaccacattctgagcaaca 777
Query: 242 agttacattttaaaaatcacattacaccattttcctgttcttttcctagcatactctatg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agttacattttaaaaatcacattacaccattttcctgttcttttcctagcatactctatg 717
Query: 302 gctggtatgctcattgctttatccaactacagacttgggttgtgtccttggagacatctt 361
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 716 gctggtatgctcattgctttatccaactacagacttgggttgtgtcctcagagacatctt 657
Query: 362 actgggaagcttatggagaaaacacatcccaccaacactctcctaatatggctacttctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 actgggaagcttatggagaaaacacatcccaccaacactctcctaatatggctacttctg 597
Query: 422 tttggacatcatctcaagtactgatgcgtttgtgtcttccttgttatatgtaagctctac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttggacatcatctcaagtactgatgcgtttgtgtcttccttgttatatgtaagctctac 537
Query: 482 agaagccagtagtgtgccttgtactcagaatattctttatggtgaatattcaatgcacgt 541
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 536 agaaaccagtagtgcgccttgtactcagaatattctttatggtgaatattcaatgcccgt 477
Query: 542 tggttgaatgaactaatgactagttaatttactaatccagaagctctcatacacattata 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggttgaatgaactaatgactagttaatttactaatccagaagctctcatacacattata 417
Query: 602 gaatctacctagtcaatacaacataatataataatgtcttttaaaacatggatcaactgg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gaatctacctagtcaatacaacataatataataatgtcttttaaaacatggatcaactgg 357
Query: 662 taccttttgtacatt 676
|||||||||||||||
Sbjct: 356 taccttttgtacatt 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1078
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1068
Effective search space: 711288
Effective search space used: 711288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no264_n02.g1 MSMg01no264_n02.g1 CHROMAT_FILE:
MSMg01no264_n02.g1 PHD_FILE: MSMg01no264_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:07 2005
(292 letters)
>mm_chr14_104059926_104060617
Length = 692
Score = 524 bits (271), Expect = e-153
Identities = 286/291 (98%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 1 atcgtccaggttgttgccacgtgatcgggagt-cccgatagcggcctctccctttctctt 59
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 201 atcgtccaggttgttgccacgtgatcgggagttcccg-tagcggcctctccctttctctt 259
Query: 60 ctgtaaggtgtccttgtctgtgtttggtgtctaatgagtctgttggaatttattcagata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgtaaggtgtccttgtctgtgtttggtgtctaatgagtctgttggaatttattcagata 319
Query: 120 attagattggtctttgttaaagtctgggcggcacctgaggacttgagtgctttcctacct 179
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 320 attagattggtctttgttaaagtctgagcggtacctgaggacttgagtgctttcctacct 379
Query: 180 gtttctccacacaacttccttcccaccgtggaccttgcagcagcagctccagacccttct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttctccacacaacttccttcccaccgtggaccttgcagcagcagctccagacccttct 439
Query: 240 agagtcttactcgtttcccttgttgtgggctcattaaacagtgctgaaatc 290
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 agagtcttactcgtttcccttgttgtgggcttattaaacagtgctgaaatc 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
