BAC Information

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BAC

Clone NameMSMg01-265A04
Chromosome14 (Build37)
Map Location 89,972,732 - 90,119,551
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A04.T7 (MSMg01no265_a04.b1)MSMg01-265A04.TJ (MSMg01no265_a04.g1)
ACCAG406395AG406396
length798777
length of high quality
(start - end)		240 (130 - 369)293 (79 - 371)
definitionCHROMAT_FILE: MSMg01no265_a04.b1 PHD_FILE: MSMg01no265_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:21 2005CHROMAT_FILE: MSMg01no265_a04.g1 PHD_FILE: MSMg01no265_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,119,316 - 90,119,551)(89,972,732 - 89,973,023)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATACATGTACCTACTCAGCTAGAGCCAAAGGATAATGTTTCTTTG
TATTTATCTACCATCTATGGATTTCTCTTTTCACTATCTTTTGGTTTGAG
TCTTGGGAAGCAGAGAACTTGGTGGTAGGAATATGTGTTCTCTTTCAAAA
TGAAAATTATGCAATTTAATTTTCTGACCAGTTGTTATGTACTGTGTCAA
TCATAATTGATGTTAAATAAAAGATACTCAAATAAGGATTGGGAGACCCA
TTGCTTTGAAAGTTAGGCAAGAAAAGTGTGGTGAGGCAGAGGTATAATTT
GGACATGGATTCTCATATGATAGGCAGCACCCGCACGACATTTTTCTTAT
ATATCTGGTGACCCTCCCTTGACAAAGGTAGTCCTCAGGTAGTGGATGTG
TTTTTATTTAAATTCTAGTGTCTGCCTAGAGATGAGCCTAACTGTTTTCA
GCTGCGAAAAATGCAGGTGTTTTATAAGGAGTTATATGTCTACCAAGCTA
ATGACAAAGAAAGAACTTGGAGTTTTTTGAAAGTTAAAATCATGTCTAAT
GCTAAAGTATTAATGTCAGGAATAGAAACTCCATGGGGTATCAGCTGAAA
AAATAGGGAATTCTTAGTTACATCCATCTGTATCTAATATCTTTTTTTAC
TCCTTCAAATTTCTGGTACTCAGTGGACATTATAGCCCTAACTAAGGAAT
CTCCCCCTCCTATCCAAATATCTTACCTCAAATTACTGTGCCCTTCCG

TCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAAAAATGTTATATTGCT
TAATGTTAATTATCTAGTTTGCAATTTGTGACAGGTCAAGATCAAATATT
CTTTATAATATTTAAAAATTTGTTTGTAAGAAAATCTCTGTATCAATGTC
TTAGTTTTCCAGTTGTATTTTAATTTAGGATCAGTGTAATTTCATGTCAT
AATATGTAGTGAATCTGAAATGAGACTGAATATTAATTCTTTTGTTACTA
TCGGAAAATATGATTCAGCCTATCAGATATTTGCATTTTTAAGAGGCTCA
CCATTCAATTTTCCTTTTTCTTTTCTTAAATAACTGCACCAATTGTGTAA
CTTATAGGAAAATCCCGAATCAACGATTAATATTCCTGATTCATACATTT
TTCAACTATCTAAGGGATATTTGTTCATTGCAGATGCTCATTTCTATTTA
TCATCTAGGGCCATGTGCCCAGGTTTTGGCGGTGTAGACATGGTATTTAC
CCTTGTAAAGATGTAGATCCTAGAGGAAAGTTGAGATTTCACTAGGGACT
ACTGTAATTTGGTTGGAAAGCTTCTCTCCCATTGGCTCAGCTTATTTGAA
CACTTGGTCCCCAGCTGTTGTCCCTATTTTGTACTGATTAAGAAAGAACT
GCCCTCATTGGAAGAAAAATTATTAACATGTGGGTACCGAACTGGGGTTA
TAAGCCTTCACCCCGACTTCCCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a04.b1 MSMg01no265_a04.b1 CHROMAT_FILE:
MSMg01no265_a04.b1 PHD_FILE: MSMg01no265_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:21 2005
         (240 letters)



>mm_chr14_90119116_90119755
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactatcttttggtttgagtcttgggaagcagagaacttggtggtaggaatatgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttcactatcttttggtttgagtcttgggaagcagagaacttggtggtaggaatatgtgtt 377

                                                                       
Query: 61  ctctttcaaaatgaaaattatgcaatttaattttctgaccagttgttatgtactgtgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctctttcaaaatgaaaattatgcaatttaattttctgaccagttgttatgtactgtgtca 317

                                                                       
Query: 121 atcataattgatgttaaataaaagatactcaaataaggattgggagacccattgctttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atcataattgatgttaaataaaagatactcaaataaggattgggagacccattgctttga 257

                                                                   
Query: 181 aagttaggcaagaaaagtgtggtgaggcagaggtataatttggacatggattctca 236
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 256 aagttaggcaagaaaagtggggtgaggcagaggtataatttggacatggattctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no265_a04.g1 MSMg01no265_a04.g1 CHROMAT_FILE:
MSMg01no265_a04.g1 PHD_FILE: MSMg01no265_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:22 2005
         (293 letters)



>mm_chr14_89972532_89973224
          Length = 693

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaaaaaatgttatattgcttaatgttaattatctagtttgcaatttgtgacaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaaaaaatgttatattgcttaatgttaattatctagtttgcaatttgtgacaggtca 260

                                                                       
Query: 61  agatcaaatattctttataatatttaaaaatttgtttgtaagaaaatctctgtatcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatcaaatattctttataatatttaaaaatttgtttgtaagaaaatctctgtatcaatg 320

                                                                       
Query: 121 tcttagttttccagttgtattttaatttaggatcagtgtaatttcatgtcataatatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttagttttccagttgtattttaatttaggatcagtgtaatttcatgtcataatatgta 380

                                                                       
Query: 181 gtgaatctgaaatgagactgaatattaattcttttgttactatcggaaaatatgattcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaatctgaaatgagactgaatattaattcttttgttactatcggaaaatatgattcag 440

                                                               
Query: 241 cctatcagatatttgcatttttaagaggctcaccattcaattttcctttttc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatcagatatttgcatttttaagaggctcaccattcaattttcctttttc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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