BAC Information

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BAC

Clone NameMSMg01-268M04
Chromosome14 (Build37)
Map Location 27,164,907 - 27,165,193
singlet/doubletsinglet
Overlap genenone
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538
Downstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268M04.T7 (MSMg01no268_m04.b1)MSMg01-268M04.TJ (MSMg01no268_m04.g1)
ACCAG409080AG409081
length723727
length of high quality
(start - end)
318 (46 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_m04.b1 PHD_FILE: MSMg01no268_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:06 2005CHROMAT_FILE: MSMg01no268_m04.g1 PHD_FILE: MSMg01no268_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGCCCACACATATGCCTCTACCAGAGGAATGCCACATAGCCTC
AATTAGATTACAGGATCAATTTCCTTTCTCCTGATTAAGACCTATTCAGC
TAGCTCCTATGATTCCTGAAATACTTTCCCATGCTAATGAGGCATTTTAG
TACCCTAAGCCTTCAGTCTGCCAACACTGTATAAGCCTTGACTCACCCTA
CATAAAGGTGATCTGCATCCTGATGGGTGGTCCAGATGTGGTCACTGGCC
ATACACACTCAGCCCCCAACCCATCATCTCTGCTCCCTTTTCCTGCATGG
ATCGTATCATTTGTTTATCCACACCCCCCCCCAGAACCACACTTTGTTCT
AAGCAGTGGAATAATTTTCATAAAAGGAATTGAATAGTGGAGTCTACTTC
GGACATGACTTTCGTAGAAAAACACATTTCACTGTGAATGTACAAACAGT
GGGAATGACTCTGAGGGCTGGTTAGTCATCACCAGGCAATCAGCCCGGCA
CACTTGTTGCAGGACCAGGCTTTGGAGCCGTGGGGTCTGGGCCTGGGCTT
TGGAACTGCGAGGTTTGGGCTTGATTCCTGGTTTCCTTACTTGCGAGTCC
TTGCTTTTGTTTTGATTTCCGGAGAACGATCTCAAACTAGGTAGCCCAGG
CTAGTCAGAATTTGATGTGTAGN
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAACTACCTCAACATAGTCTGT
CCAAGTAGAGTATGCTCCTTCCCCACAGCAGTCTTAGTCCTTAATGAGTA
GATAGCAGAGCTGTGAGACTCTTCTGAAGAGCTGGTGTGCTCAGTGGAAA
CTTTGCCTGATCCGATTGCTGGAGGTTGCTTTCTGCTTACCCTTTCTCTT
TCTTCTATCTCTGTGTGTGAATTTGTCTGGAGTTCAGGAGGCTAGGCATG
TGGGGGTGCAGGGCATCCTGTGTGTGCCTTGGCTGGAGGAGACCAACTAA
ATTTGTCAGCCTCGGTGANTAAGGCCCCCCCCCCTGGAACAAGACAGTTA
CTTGCTATAAATTCACCGGTGAGGCAAATGACACCCTTGCTGCGGATGAT
TCAGTCTGATTCTGATCCCTGTGCCTGTTGGCTCACTGGTTTTGGAAGAA
AGAGAGAGAAAGAAAAAAGCCCCAACCAGAAATACTAGAACCTTGAAATC
TACCCCCCCCCAGCAAGCTCTGGGGCACTGGGTGCAGGGAGGATGCATTT
CTGCTCATAGTCACTTTGTTAGCTCATTGCTCAGATCTTTTGTAAGCCAT
CGGAGTCCTCAGCCCTTCATATGCAGGAAGCTCGTCAGGGGAGCCTATGT
GACTGATAAAATCACACCAAAACCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_m04.g1 MSMg01no268_m04.g1 CHROMAT_FILE:
MSMg01no268_m04.g1 PHD_FILE: MSMg01no268_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:06 2005
         (287 letters)



>mm_chr14_27164707_27165393
          Length = 687

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaactacctcaacatagtctgtccaagtagag-tatgctccttccccacagcagtctt 59
           ||||||||||||||||||||||| |||||||| | || ||||||||||||||||||||||
Sbjct: 487 tctaactacctcaacatagtctggccaagtag-gttacgctccttccccacagcagtctt 429

                                                                       
Query: 60  agtccttaatgagtagatagcagagctgtgagactcttctgaagagctggtgtgctcagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtccttaatgagtagatagcagagctgtgagactcttctgaagagctggtgtgctcagt 369

                                                                       
Query: 120 ggaaactttgcctgatccgattgctggaggttgctttctgcttaccctttctctttcttc 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaaactttgcctgatctgattgctggaggttgctttctgcttaccctttctctttcttc 309

                                                                       
Query: 180 tatctctgtgtgtgaatttgtctggagttcaggaggctaggcatgtgggggtgcagggca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tatctctgtgtgtgaatttgtctggagttcaggaggctaggcatgtgggggtgcagggca 249

                                                           
Query: 240 tcctgtgtgtgccttggctggaggagaccaactaaatttgtcagcctc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tcctgtgtgtgccttggctggaggagaccaactaaatttgtcagcctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)