BAC Information

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BAC

Clone NameMSMg01-269L02
Chromosome14 (Build37)
Map Location 105,427,316 - 105,427,639
singlet/doubletsinglet
Overlap geneLOC435420
Upstream genePou4f1, 2610206B13Rik, D130009I18Rik
Downstream geneRbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469, Spry2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L02.T7 (MSMg01no269_l02.b1)MSMg01-269L02.TJ (MSMg01no269_l02.g1)
ACCAG409741AG409742
length723728
length of high quality
(start - end)		656 (44 - 699)321 (76 - 396)
definitionCHROMAT_FILE: MSMg01no269_l02.b1 PHD_FILE: MSMg01no269_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:12 2005CHROMAT_FILE: MSMg01no269_l02.g1 PHD_FILE: MSMg01no269_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTAAACATGATGAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAACTAAATGGAAAGAAACTCAAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACATTGTAC
TTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAGGAAGATGTCAAAATATCACTATTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAAAAATTTCTCCAGAGAATGCCTAAACCTGA
TAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTTA
ATGGCCTTTCTCTTACCAAAGGATAAACAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCACAATAGTCACAAATAATATAAAATACCTTGGTGTGA
CTCTAACTAAGGAAGTGAAAGATCTATATGATAAGAACTTCAATTCTCTG
ACGAAAAAAATTGAAGATCTCAGAAAATGGAAAGATCTCCCATGCTCATG
GATTGACAGGATTAATATAGTAAAAATGGCTATTCTGCCAAAAGCAATCT
ACAAATTCAATGCAATCCCGATCAAAATTCTAACTCAATTCTTCACTGTG
TTAGAAAGGGCAATTTGCAAATT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCGGCACTTGAGCTGTGGAAGCCA
ACATCACTGTGATGACAGATGGCCTCCCCAGATACTTACCAAGGAAATCT
GCTACAGAACAACTTTGTGAGGTAGATCTTCACGAAGAAGGAAAACAATA
ACCTCATCTTCGGAAAGCATTTTGAAGGAGCTTCATATAATTTAATTACT
TGTTTGAAAACACAATTTAGCTAAAGATGTGCTTCGCAGGAATCCCCAAG
CATTTAGCAAGTACCTGAAATGCCCCGAGAATAGCGTCTGTATTAATGAG
GATGGTGATGATGATGATATGATAATCGATGATGATGGTGGTGGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l02.g1 MSMg01no269_l02.g1 CHROMAT_FILE:
MSMg01no269_l02.g1 PHD_FILE: MSMg01no269_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:12 2005
         (321 letters)



>mm_chr14_105427170_105427890
          Length = 721

 Score =  557 bits (288), Expect = e-163
 Identities = 313/324 (96%), Gaps = 8/324 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggcacttgagctgtggaagccaacatcactgtgatgacagatggcctccccagatactta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggcacttgagctgtggaagccaacatcactgtgatgacagatggcctccccagatactta 411

                                                                       
Query: 64  ccaaggaaatctgctacagaacaactttgtgaggtagatcttcacgaagaaggaaaacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccaaggaaatctgctacagaacaactttgtgaggtagatcttcacgaagaaggaaaacaa 351

                                                                       
Query: 124 taacctcatcttcggaaagcattttgaaggagcttcatataatttaattacttgtttgaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taacctcatcttcggaaagcattttgaaggagcttcatataatttaattacttgtttgaa 291

                                                                       
Query: 184 aacacaatttagctaaagatgtgcttcgcaggaatccccaagcatttagcaagtacctga 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aacactatttagctaaagatgtgcttcgcaggaatccccaagcatttagcaagtacctga 231

                                                                       
Query: 244 aatgccccgagaatagcgtctgtattaatgaggatggtgatgatgatgatatgat-a--a 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 230 aatgccccgagaatattgtctgtattaatgaggatggtgatgatgatgatatgatgatga 171

                                   
Query: 301 t--cg---atgatgatggtggtgg 319
           |  ||   ||||||||||||||||
Sbjct: 170 tgacgataatgatgatggtggtgg 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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