BAC Information

Click to search

BAC

Clone NameMSMg01-269P07
Chromosome14 (Build37)
Map Location 113,845,000 - 113,845,276
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791, LOC100043821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P07.T7 (MSMg01no269_p07.b1)MSMg01-269P07.TJ (MSMg01no269_p07.g1)
ACCAG409928AG409929
length737732
length of high quality
(start - end)
239 (122 - 360)281 (70 - 350)
definitionCHROMAT_FILE: MSMg01no269_p07.b1 PHD_FILE: MSMg01no269_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:31 2005CHROMAT_FILE: MSMg01no269_p07.g1 PHD_FILE: MSMg01no269_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
CAACAGATCCATCATGAATGTCTGAGAAGCAACTAAAGAAAAGTTTAAAG
TCCTTAGTGATCTTTTACCCGCAAATCAAAAAAGAAACAAAACAAAACAA
AACAAAACCTGAGATTATACTTTACACCAATCAGAATGGCTAAGATCAAA
ACCTCAGGTGACAACCCATGTTGGATGAGTTGTGGAGAAAGAGGAATACT
CTTCCATTGCTGGTGGGATTGCAAACTGGTACAACCACTCTGGAAGTCAA
TCTGGAGGTTTCTCAGAAAATTAAAAGTGGATCTAACTGAAGACCCAACA
ATACCACTCTTGTTTATTACACCACCACGTTATCCTACCATGCCACAGGT
GCACATGTTTAACTGCTTGTCTTAGATAGGGATTATTTCTGTAAACAGAC
ACCATGACCAAGATAACTCTTATAATGACAACATTTAGGTGGGGCTGGCT
GACAGGTTCAGAATTTCAGTCCATTATCATCAAGGTGGGATTATGTTGGC
ATCCAGGCAGATATGGCGCTGGAGGAGCTGAGAGTTCCATCTCTAGTTCC
AAAGGCAGCTAGCAGAAAACTGACTTCTAGGCAGCAAGGATGAATGTATT
AAAGCCACACCCACAGTGACACACCTACTCCAACAAGGCTATACCTCCCA
AAAGTGCTACTCCCCTGAGCCAAAATATGCAAACCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGAAGAGCAAAACATTCATATCATTGTGA
ATCAAAGAAAAAGAAAACCCCGCAGAAGCCTGATTCTATCTTGAAAACAT
TCCCTTCTCCTGCTCTTAAAAATCCCACAGCACCACAGTCAGGATAATAT
TGCCAAATTACATCAATTTGCTGGCAAGTTTCATGAAATCATTGTTTTTC
ATGAAATCATTGCTGAGTAGTATTCCACAGTGTATATGTACCACATTGTC
TGTATTCATTCCTCTGTTTTTTTATACCTGAGCTGTTTCCAACTTCGGGC
TATTATTTGATGTTTCGCNANGACCANAGCCTAACATTTATTTAGGTGNT
TNTCGGNNNNCTGAGATTCAACNGTAGNGNGAAATCTTTTTGGCTGTGTA
TCCTATTTTTAATAGGTTTCTTTGGTTCTCTGGAGTCTACCTTCTTGAGT
TCTTTGTAAATGCTCGATATGAGCCCCTATGTCAGATGTAGGGTTAGTCG
AGATCTTTTCCCAATCTATGGATTGTCGATTTGTCCTATTGCTGTTTGTC
CTTGTTATATGTTAGAGCATTTTTTGAGTATATGCCCAGGAGGGATATAG
CTTTTGTCTCAGGTAAAAACTATTTCCAGTTTTCTGAGGAACTGCCAGAC
TGAATTCCAGAGTGTGTGTACCAGCTTGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p07.g1 MSMg01no269_p07.g1 CHROMAT_FILE:
MSMg01no269_p07.g1 PHD_FILE: MSMg01no269_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:31 2005
         (281 letters)



>mm_chr14_113844800_113845480
          Length = 681

 Score =  445 bits (230), Expect = e-129
 Identities = 265/286 (92%), Gaps = 18/286 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgaagagcaaaacattcatatcattgtgaatcaaagaaaaagaaaaccccgc----ag 56
           ||||||||||||||||||||||||||||||||||||||||||||||||    |     ||
Sbjct: 201 cttgaagagcaaaacattcatatcattgtgaatcaaagaaaaagaaaa----gatggtag 256

                                                                       
Query: 57  aagcctgattctatcttgaaaacattcccttctcctgctcttaaaaatcccacagcacca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aagcctgattctatcttgaaaacattcccttctcctgctcttaaaaatcccacagcacca 316

                                                                       
Query: 117 cagtcaggataatattgccaaattacatcaatttgctggcaagtttcatgaaatcattgt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagtcaggataatattgccaaattacatcaatttgctggcaagtttcatgaaatcattgt 376

                                                                       
Query: 177 ttttcatgaaatcattgctgagtagtattccacagtgtatatgtaccacattgtctgtat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttttcatgaaatcattgctgagtagtattccacagtgtatatgtaccacattgtctgtat 436

                                                         
Query: 237 tcattcctctgttttttt-----atacctgagctgtttccaacttc 277
           ||||||||||| |          | |||||||||||||||||||||
Sbjct: 437 tcattcctctgct-----gagggacacctgagctgtttccaacttc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)