BAC Information

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BAC

Clone NameMSMg01-269P23
Chromosome14 (Build37)
Map Location 26,663,935 - 26,664,168
singlet/doubletsinglet
Overlap geneAnxa11
Upstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik
Downstream genePlac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269P23.T7 (MSMg01no269_p23.b1)MSMg01-269P23.TJ (MSMg01no269_p23.g1)
ACCAG409959AG409960
length721720
length of high quality
(start - end)
---238 (126 - 363)
definitionCHROMAT_FILE: MSMg01no269_p23.b1 PHD_FILE: MSMg01no269_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:33 2005CHROMAT_FILE: MSMg01no269_p23.g1 PHD_FILE: MSMg01no269_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGCGGCGCGGANA
CCAAGGCTTATACACAAAATAGCCGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTATAGATCAAGTAGGCCTTGAAT
TCACAGAGATCTGCCTTTCTTACCTCCCAAATGCTGGGATCAAAGGTGTG
TGCCACCATTGCATGGTGCAGGTTGGCCACTGCTGCCTGGCACAAGTTGA
TGTTTTTAACAGTTCTGCCATGCTCAGGTACTGAGCGGTTAGAACCAGTG
GCAACTGATGCACTGTACCTGTGTATCACGGGTGGCTGGAGGATGCATAA
AGCACACAAGGCAAAGTGGTGGTGTATAAGTAATCAAATGCGACAGCTAG
TAGATAGTATTTTGAATCAACTTTANAACGNGNNCCCCAGNTTGAACTGN
CCTGGNNNAGNACACACCTCTCTGAACTCTTATCTTTAAATGTCCATTCC
TTACTTACAAGCCATTCTCTTTAACCTCTCTGTTATTGGCCCAGTTCTCC
AGACAGGCCTTGGAAGGATTTGTATGACCACATATTTAGCCTTTGTGCCT
TTGGAGGGTGGAGACTTTCTGAATCTTTCTAAGAGCCCATGTGGGTCCTC
TTTCAAGTATTTTCTCTGTAGCTCTAGTTGACCTGGAACTCTCTCCGTAG
ACCAGGCTGGCCTCAAACTCACAGAGATGAGTGCCATTGCATATTTTGTT
TCCTGAAGGCCAGAGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_p23.g1 MSMg01no269_p23.g1 CHROMAT_FILE:
MSMg01no269_p23.g1 PHD_FILE: MSMg01no269_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:33 2005
         (238 letters)



>mm_chr14_26663735_26664372
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaaatgctgggatcaaaggtgtgtgccaccattgcatggtgcaggttggccactgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaaatgctgggatcaaaggtgtgtgccaccattgcatggtgcaggttggccactgctg 260

                                                                       
Query: 61  cctggcacaagttgatgtttttaacagttctgccatgctcaggtactgagcggttagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggcacaagttgatgtttttaacagttctgccatgctcaggtactgagcggttagaac 320

                                                                       
Query: 121 cagtggcaactgatgcactgtacctgtgtatcacgggtggctggaggatgcataaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtggcaactgatgcactgtacctgtgtatcacgggtggctggaggatgcataaagcac 380

                                                                 
Query: 181 acaaggcaaagtggtggtgtataagtaatcaaatgcgacagctagtagatagta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaggcaaagtggtggtgtataagtaatcaaatgcgacagctagtagatagta 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)