BAC Information

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BAC

Clone NameMSMg01-270B24
Chromosome14 (Build37)
Map Location 46,866,074 - 46,980,051
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270B24.T7 (MSMg01no270_b24.b1)MSMg01-270B24.TJ (MSMg01no270_b24.g1)
ACCAG410050AG410051
length722759
length of high quality
(start - end)		665 (45 - 709)692 (68 - 759)
definitionCHROMAT_FILE: MSMg01no270_b24.b1 PHD_FILE: MSMg01no270_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:42 2005CHROMAT_FILE: MSMg01no270_b24.g1 PHD_FILE: MSMg01no270_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,866,074 - 46,866,734)(46,979,560 - 46,980,051)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCTTAAAATGCAGTCTCCCTATCTCCTCAGCCTATGTATGTTC
TAGAAACCTGAGGTGTGTGGTGTCAATTGGGCTGCTTAAATTTCTTTTGG
GGTTCAGGTGTTTGTAGAACCTAAATATCCCGGTTCTCAGGGAACGAAGA
GCATTGCATTTCCTTTCCAGAGTCAGACTTCTGAGAACCTGTTCTCTGGA
AGCTGTTCACAATAAGTAAGAAGTTGGTGTGAGGCACAGGGCTGGGGGAA
TCTAGGCATCTTCCATTGAGGGACAACTAAATACAGGACTCCTCATGAGC
TCCGACATGAGACTTTCCAAACAGTTGGGATAGAGGAAAGTCCAGACCGG
AGAAGCATCTCTGTTAGTAAACACAGAATTGATGGTTCTGAGAGATAAAT
CAACATCATCATGGAACCTGGAGGGAGCCATTGTTCCTGTTCAAACCTCA
GAAGAAATGGGAAACAAACAGGGATTGGCTCAATGTAGACACTGGAGATT
AGTCCTAGGCCAGGATGAACCCATGTCTCAGCTTTGCATAGCAAAGCACA
CTTGGAACCATCACAACCTCTTGATAGAATCAGAGGTGCTCAACCTCACA
CCATAGAATATCAACCGAAGTTCCTCTGCAGTGAACAAATCAGTTTTATA
AAAAAGTCAAAGAAAGATCCAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTAGTCTCCCTGTGAGACAAGAGCTCCATGCC
CATTGCATCTCCCCCGCATCTTCAGCTTTGAGCAGAGTGCCTTAACTCTG
GTAAGTGCTCCATGTGTAATGCATTGAATGTATGAGTAAGACGGGATTCA
GACACAGGGCTGAGATAGGGCAGTTACAGAGAACTTGGCCGTGTAAAGAT
GAGGACTTCAATCCCAGCCCCCAGCAGAGTGGGGTGTGTTGCAATTCCAG
GGCTGGGGAGGCAGAGAGGAATGGACTTCTCCAGTTTGCTGGCCACCAAG
TCTAGCTTAATTGCTGAAAACCGGGTCTTAGCAAAAGACTCTATTTCAAC
AAAACAAGTCGAAAAACCAAGGAGATCTTTTTAGAGGAATGACAACCGAG
TTCTGCCTGCACACCCATGTTGCATTCCCAGTTGTAGGACGTGAGTGCAA
ACCCCAATACCAGGAATTACTTTTGAATCATCATAGCTAGATGATGAACA
GTACCTAGTGGATGTTTGAAGAGGAAAGAGGATATTCTGAATTTCCTTTT
CGTGGAAACTTTCACATAGAGACAGTTGCTGTGGTTTTTAGATACGAAGT
ACTTCCACCCCTAAGGCTAGTGTGTTAAAAGATTCCCTCCCCCCATCAAA
TATGCCTCATACATTATAGCTCCTCCCTGCCCCTCCCACCAAGCCTCATG
TAACTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_b24.b1 MSMg01no270_b24.b1 CHROMAT_FILE:
MSMg01no270_b24.b1 PHD_FILE: MSMg01no270_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:42 2005
         (665 letters)



>mm_chr14_46865870_46866934
          Length = 1065

 Score = 1270 bits (657), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcttaaaatgcagtctccctatctcctcagcctatgtatgttctagaaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcttaaaatgcagtctccctatctcctcagcctatgtatgttctagaaacc 264

                                                                       
Query: 65  tgaggtgtgtggtgtcaattgggctgcttaaatttcttttggggttcaggtgtttgtaga 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaggtgtgtggtgtgaattgggctgcttaaatttcttttggggttcaggtgtttgtaga 324

                                                                       
Query: 125 acctaaatatcccggttctcagggaacgaagagcattgcatttcctttccagagtcagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctaaatatcccggttctcagggaacgaagagcattgcatttcctttccagagtcagac 384

                                                                       
Query: 185 ttctgagaacctgttctctggaagctgttcacaataagtaagaagttggtgtgaggcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgagaacctgttctctggaagctgttcacaataagtaagaagttggtgtgaggcaca 444

                                                                       
Query: 245 gggctgggggaatctaggcatcttccattgagggacaactaaatacaggactcctcatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggctgggggaatctaggcatcttccattgagggacaactaaatacaggactcctcatga 504

                                                                       
Query: 305 gctccgacatgagactttccaaacagttgggatagaggaaagtccagaccggagaagcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctccgacatgagactttccaaacagttgggatagaggaaagtccagaccggagaagcat 564

                                                                       
Query: 365 ctctgttagtaaacacagaattgatggttctgagagataaatcaacatcatcatggaacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctgttagtaaacacagaattgatggttctgagagataaatcaacatcatcatggaacc 624

                                                                       
Query: 425 tggagggagccattgttcctgttcaaacctcagaagaaatgggaaacaaacagggattgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggagggagccattgttcctgttcaaacctcagaagaaatgggaaacaaacagggattgg 684

                                                                       
Query: 485 ctcaatgtagacactggagattagtcctaggccaggatgaacccatgtctcagctttgca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcaatgtagacactggagattagtcctaggccaggatgaacccatgtctcagctttgca 744

                                                                       
Query: 545 tagcaaagcacacttggaaccatcacaacctcttgatagaatcagaggtgctcaacctca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagcaaagcacacttggaaccatcacaacctcttgatagaatcagaggtgctcaacctca 804

                                                                       
Query: 605 caccatagaatatcaaccgaagttcctctgcagtgaacaaatcagttttataaaaaagtc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caccatagaatatcaaccgaagttcctctgcagtgaacaaatcagttttataaaaaagtc 864

            
Query: 665 a 665
           |
Sbjct: 865 a 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_b24.g1 MSMg01no270_b24.g1 CHROMAT_FILE:
MSMg01no270_b24.g1 PHD_FILE: MSMg01no270_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:43 2005
         (692 letters)



>mm_chr14_46978960_46980051
          Length = 1092

 Score =  951 bits (492), Expect = 0.0
 Identities = 492/492 (100%)
 Strand = Plus / Minus

                                                                        
Query: 201  cccccagcagagtggggtgtgttgcaattccagggctggggaggcagagaggaatggact 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 cccccagcagagtggggtgtgttgcaattccagggctggggaggcagagaggaatggact 1033

                                                                        
Query: 261  tctccagtttgctggccaccaagtctagcttaattgctgaaaaccgggtcttagcaaaag 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tctccagtttgctggccaccaagtctagcttaattgctgaaaaccgggtcttagcaaaag 973

                                                                        
Query: 321  actctatttcaacaaaacaagtcgaaaaaccaaggagatctttttagaggaatgacaacc 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  actctatttcaacaaaacaagtcgaaaaaccaaggagatctttttagaggaatgacaacc 913

                                                                        
Query: 381  gagttctgcctgcacacccatgttgcattcccagttgtaggacgtgagtgcaaaccccaa 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  gagttctgcctgcacacccatgttgcattcccagttgtaggacgtgagtgcaaaccccaa 853

                                                                        
Query: 441  taccaggaattacttttgaatcatcatagctagatgatgaacagtacctagtggatgttt 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  taccaggaattacttttgaatcatcatagctagatgatgaacagtacctagtggatgttt 793

                                                                        
Query: 501  gaagaggaaagaggatattctgaatttccttttcgtggaaactttcacatagagacagtt 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  gaagaggaaagaggatattctgaatttccttttcgtggaaactttcacatagagacagtt 733

                                                                        
Query: 561  gctgtggtttttagatacgaagtacttccacccctaaggctagtgtgttaaaagattccc 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  gctgtggtttttagatacgaagtacttccacccctaaggctagtgtgttaaaagattccc 673

                                                                        
Query: 621  tccccccatcaaatatgcctcatacattatagctcctccctgcccctcccaccaagcctc 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  tccccccatcaaatatgcctcatacattatagctcctccctgcccctcccaccaagcctc 613

                        
Query: 681  atgtaactaaag 692
            ||||||||||||
Sbjct: 612  atgtaactaaag 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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