BAC Information

Click to search

BAC

Clone NameMSMg01-270D01
Chromosome14 (Build37)
Map Location 63,067,945 - 63,068,550
singlet/doubletsinglet
Overlap geneGucy1b2
Upstream geneLOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7, Rnaseh2b
Downstream geneLOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270D01.T7 (MSMg01no270_d01.b1)MSMg01-270D01.TJ (MSMg01no270_d01.g1)
ACCAG410098AG410099
length742737
length of high quality
(start - end)
704 (39 - 742)659 (79 - 737)
definitionCHROMAT_FILE: MSMg01no270_d01.b1 PHD_FILE: MSMg01no270_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:47 2005CHROMAT_FILE: MSMg01no270_d01.g1 PHD_FILE: MSMg01no270_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AAACAACAACAAAAAAATTCAAGCAATATTCAGCAATTGAGCTCTACAGA
AGGCACTAGAAGGAAAAAGTCAGTCTGAAGAGAAGGTCAACTACACTCAA
GAGGACACAATGAATAAATAATCCCTTAAGAGTAAATGATAGGAGGGGTC
TACACTACAACAAAAATAACATGAATCAATAAACACTGCTCACTGACAAC
TGTCAGTATTAAAGGTTTTGACTCACCAGTACAAAGACTCAGACAAATAG
ATTGGTTTAGAAGACAGGGTCAATCTTTCTGTGGCATCTAAGAAACATAC
TTCACCCTCAAGGACAGACATCTCATTAGGGTAAAAGGATGAAAAAAGAT
ATCCCAAGCAAATGAATCCAAGAAGCAAACACGTGTAGCTATCTTAATAT
TTGACTGAATAGACTTCAAATCAATACTAAGCAGAAGAGATAGGGAAGGA
CACAACATACGTATGGAAAGAAAACACATCCAGAGAATAGTACAAATATA
AAGCATTTACACACCAGACACAAGAGCAAGTCATAAAAGAAACACTATTA
TAGCTACATTCACATACCAATCCTCAGAGTGGTAGTAGGTGACTTCAATA
CCTTACTCTTATCAATAGTTCATCCAGACAAAGGCTAATAAGATCAATAT
TTGAGTTAAATAACATCATAAATCAAATAGACCAGGTAGGCA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTGAGCCTCAGTTTTCCTTG
CTGTGCACTGGTAGGTATTTATGCCCATTTGGATGCAGACGGTGGGTTCA
ATGCTCTTATCTGACCTTGCACCCATTTGTAAAGATGGATAGTTATGGCC
TTTGTTAAGATGGATTGATTTGGAGTACCTGCGGGCTTTTAAGGATTTCC
AGGAGTTCAGATTTGAGGCTTCAGTTAGGTGCTCATTTGTTTAGTGTCTT
TATTAAGTACCTGCTGTGTGCCAGGTTCTATTGTGGGACTTTAATCAAAA
TTTAGGGAAGTGATTCATGCATTGTCACCGTATGGAGCTTAGGATTTAGT
AAAGGAAGAAGAGGGACCACTGCCTGTTGCAGGAGCCTTCATGGGGTCAG
GCATGGAGGGGAGCCAAGGTTGGAGGAGTGTACACAGAAGTGAAGCATGC
ATTTTATGTGTATGAGTGATTGGTGTCACGCTAGGGAAAGGGCACATCTA
GGGGTTGGAGGACAGGAAGGGGAGAGCATGGCACTGTTGTGGGAACTGGA
ACTACAGTTCCAGGATACAGCCTGCCAGTGTGGCCCTCTGTGCTGTGTTT
TCTCTTTCTGCCATGGGCTTGGGAAGCTGGTTCAGTTGACAAACTGCTGG
TTACAGGAAGTATAAGATCCTGGGTTCAGCTATCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_d01.g1 MSMg01no270_d01.g1 CHROMAT_FILE:
MSMg01no270_d01.g1 PHD_FILE: MSMg01no270_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:47 2005
         (659 letters)



>mm_chr14_63067492_63068550
          Length = 1059

 Score = 1110 bits (574), Expect = 0.0
 Identities = 598/606 (98%)
 Strand = Plus / Minus

                                                                        
Query: 54   gatgcagacggtgggttcaatgctcttatctgaccttgcacccatttgtaaagatggata 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gatgcagacggtgggttcaatgctcttatctgaccttgcacccatttgtaaagatggata 1000

                                                                        
Query: 114  gttatggcctttgttaagatggattgatttggagtacctgcgggcttttaaggatttcca 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999  gttatggcctttgttaagatggattgatttggagtacctgcgggcttttaaggatttcca 940

                                                                        
Query: 174  ggagttcagatttgaggcttcagttaggtgctcatttgtttagtgtctttattaagtacc 233
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939  ggagttcagacttgaggcttcagttaggtgctcatttgtttagtgtctttattaagtacc 880

                                                                        
Query: 234  tgctgtgtgccaggttctattgtgggactttaatcaaaatttagggaagtgattcatgca 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879  tgctgtgtgccaggttctattgtgggactttaatcaaaatttagggaagtgattcatgca 820

                                                                        
Query: 294  ttgtcaccgtatggagcttaggatttagtaaaggaagaagagggaccactgcctgttgca 353
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 819  ttgtcaccgtatggagcttaggatttagtcaaggaagaagagggaccactgcctgttgca 760

                                                                        
Query: 354  ggagccttcatggggtcaggcatggaggggagccaaggttggaggagtgtacacagaagt 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  ggagccttcatggggtcaggcatggaggggagccaaggttggaggagtgtacacagaagt 700

                                                                        
Query: 414  gaagcatgcattttatgtgtatgagtgattggtgtcacgctagggaaagggcacatctag 473
            ||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||
Sbjct: 699  gaagcttgcattttatgtgtatgagtgattggtgtcacactagaaaaagggcacatctag 640

                                                                        
Query: 474  gggttggaggacaggaaggggagagcatggcactgttgtgggaactggaactacagttcc 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  gggttggaggacaggaaggggagagcatggcactgttgtgggaactggaactacagttcc 580

                                                                        
Query: 534  aggatacagcctgccagtgtggccctctgtgctgtgttttctctttctgccatgggcttg 593
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 579  aggatacagcctgccagtgtggccctctgtgctgtgttttctctttctgtcatgggcttg 520

                                                                        
Query: 594  ggaagctggttcagttgacaaactgctggttacaggaagtataagatcctgggttcagct 653
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 519  ggaagctggttcagttgacaaactgctggttacaggaagcataagatcctgggttcagct 460

                  
Query: 654  atccag 659
            ||||||
Sbjct: 459  atccag 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)