BAC Information

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BAC

Clone NameMSMg01-270J14
Chromosome14 (Build37)
Map Location 68,936,573 - 68,937,220
singlet/doubletsinglet
Overlap genenone
Upstream geneEbf2, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270J14.T7 (MSMg01no270_j14.b1)MSMg01-270J14.TJ (MSMg01no270_j14.g1)
ACCAG410388AG410389
length720724
length of high quality
(start - end)
321 (42 - 362)648 (77 - 724)
definitionCHROMAT_FILE: MSMg01no270_j14.b1 PHD_FILE: MSMg01no270_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:17 2005CHROMAT_FILE: MSMg01no270_j14.g1 PHD_FILE: MSMg01no270_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCATGCATCCTGGAAGTTCATCAATGGAGTAGATGTAGACTGAGGGAG
GAGCCGAGGGAGTCTCTCCCTCTCCTGCACCACTGCCCATCAGACAAGAG
GCAGGGCCAGCTCTCCTGCCTGCTGACATGGAAGGGGTAAGGGCATCTCT
CCCTTGCTCACACTGCTATATGGAAGACAAGTTGTAGGACCAGTTCTTCC
ATGATCACACTCCTGAGGCTGGCTCACCCACACCTCCTCCATCAAGGTTG
AGGTGTAGTGCCTGCTCTCCTGAGTGCTACAGCAGGGGAGGGGCAGGGAC
AGCTCTCCTGCTCTCATGAGAGAGGAGGGTATCTCTCCCTTGTCCACACC
ACTGCGAGGGAGATGAATGGAAGAGACAGCTCTTCCACATTCCTATCCTT
GGGGCTGGTTCACCCATAACTCCTGAAATGTACAGGGCCCACTCTCCTAA
GTATTGCAGCTGGCTGAGGTTAGGGTTAGCTCCCCCACTCTCCTGCTTCC
AGGGCCAGCTCTCCCACAATGCCCAAGGGTGAGGTGGGGCCAGTTCTGCA
CAGCTTTCAAATATCAACATGTCCCTGGGCAGTAGCCCAGACCAAGGATG
TCCACCTGGTCTTTGGTGATAATGGATCCTTACTGCTGCAGGTACACTGA
CTCAAAATGGGGTCCTGTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTGAGCACCTTATGATCTGCTG
TAGTAATAATCCAACAATCTAACCTCAAACTGACAAAGCAAGAGAGTTGG
AAAAGATGCTTTAAGGTCAGGTCTGAACAGTTGGAAAAGTAATGCTAACA
GCAGCCCAGGGTGCTAGAGACCTCCAACCACTGCTGAGGGTCCAGAACAA
ACCAAGTGCCATAGTTCTACCTAGAAGGCATAGGTTCATGGCTCAAATTA
GCAGTAAGAGTCATATATGGACATTTTTCACATTAGTCATAAAAACTTTC
TTTAGCCTCCAAATAAAAAAACTGACATTTTATTTCACCCAAACATTTGA
TGTCTCTGTTTGAAGAACTGTTATTAACATTCTTGTTTTTATTGCTTGAG
AACTTCAGATCCCCCCTGCCCCATGGTAAAGGTAGACAGCAGTTTTCTGA
ATTCTGTTCTTCTCTTAGTCCCTTCTCTTTTGCTTTACCAGAAATAGGAG
GTCTGTTTCGGTACAAATGCACGGGTGCAAAGAGATCCAAGCTCTATTAC
CACCTTAGCAATTTCTAAATTTGGGGGTTGAAAGGACTCATTAAGTTGAC
CTCACATTTTTTAAACTACTACCATTTTTAAGTAGAAAAAGAGAATATTT
TGTGATTCCCCAAACACTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_j14.g1 MSMg01no270_j14.g1 CHROMAT_FILE:
MSMg01no270_j14.g1 PHD_FILE: MSMg01no270_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:17 2005
         (648 letters)



>mm_chr14_68936373_68937420
          Length = 1048

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgagcaccttatgatctgctgtagtaataatccaacaatctaacctcaaactgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 acttgagcaccttatgatctgctgtagtaataatccaacaatctaacctcaaactgacaa 789

                                                                       
Query: 61  agcaagagagttggaaaagatgctttaaggtcaggtctgaacagttggaaaagtaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 agcaagagagttggaaaagatgctttaaggtcaggtctgaacagttggaaaagtaatgct 729

                                                                       
Query: 121 aacagcagcccagggtgctagagacctccaaccactgctgagggtccagaacaaaccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacagcagcccagggtgctagagacctccaaccactgctgagggtccagaacaaaccaag 669

                                                                       
Query: 181 tgccatagttctacctagaaggcataggttcatggctcaaattagcagtaagagtcatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgccatagttctacctagaaggcataggttcatggctcaaattagcagtaagagtcatat 609

                                                                       
Query: 241 atggacatttttcacattagtcataaaaactttctttagcctccaaataaaaaaactgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atggacatttttcacattagtcataaaaactttctttagcctccaaataaaaaaactgac 549

                                                                       
Query: 301 attttatttcacccaaacatttgatgtctctgtttgaagaactgttattaacattcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 attttatttcacccaaacatttgatgtctctgtttgaagaactgttattaacattcttgt 489

                                                                       
Query: 361 ttttattgcttgagaacttcagatcccccctgccccatggtaaaggtagacagcagtttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttttattgcttgagaacttcagatcccccctgccccatggtaaaggtagacagcagtttt 429

                                                                       
Query: 421 ctgaattctgttcttctcttagtcccttctcttttgctttaccagaaataggaggtctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgaattctgttcttctcttagtcccttctcttttgctttaccagaaataggaggtctgt 369

                                                                       
Query: 481 ttcggtacaaatgcacgggtgcaaagagatccaagctctattaccaccttagcaatttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcggtacaaatgcacgggtgcaaagagatccaagctctattaccaccttagcaatttct 309

                                                                       
Query: 541 aaatttgggggttgaaaggactcattaagttgacctcacattttttaaactactaccatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aaatttgggggttgaaaggactcattaagttgacctcacattttttaaactactaccatt 249

                                                           
Query: 601 tttaagtagaaaaagagaatattttgtgattccccaaacactcctctt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttaagtagaaaaagagaatattttgtgattccccaaacactcctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)