BAC Information

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BAC

Clone NameMSMg01-270K17
Chromosome14 (Build37)
Map Location 37,587,614 - 37,700,937
singlet/doubletdoublet
Overlap geneGcap14
Upstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
Downstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270K17.T7 (MSMg01no270_k17.b1)MSMg01-270K17.TJ (MSMg01no270_k17.g1)
ACCAG410440AG410441
length733758
length of high quality
(start - end)		323 (40 - 362)678 (69 - 746)
definitionCHROMAT_FILE: MSMg01no270_k17.b1 PHD_FILE: MSMg01no270_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:23 2005CHROMAT_FILE: MSMg01no270_k17.g1 PHD_FILE: MSMg01no270_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,700,620 - 37,700,937)(37,587,614 - 37,588,290)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACTTTATCTTCACATAACTCATAGAGCTATTAATTCTTATTTTATAGTC
AGAAATGTAAATCAACTAATCAGAGTGATGTTGCAACTTGTTCAGGAGAA
GTAAACATACCACAATTGAATTTCATTCTAAATCCAGAGCCTGCGTCTTA
CAGTTTATTGTAGATGACTTTTTCCTCTGATAAACAGTATAATGGGTTCA
GTATAAAGGAGCTAAAAGATCTAAATAGTTTTATGTACTTCCTTCTAGTC
TTTTATAAAGAGATAATCTTTTGTAGTTCCTGATACTTTTGAATCATATA
AACATGTTTCATTGTATTATAACTTGACATCACTCTTTTTTGGTAGATGA
TAATGTATTTGAGAGTAATTATAATTGAATCTTTTTCTTCTAGTCCACAT
AAATGACTACAGTGCATTTGATCTTTGTACAATCCAGTGCCAGCACTTCC
TTAGGCAGAGCTCCGAAAATCATTTGCTAAACTTTGTGTGTGTGCTCACT
AGGGGCAGTTACCATGCATATTCCAACTGCCAGACATACCGGTAGGCTTG
ATGTACATGGCCCACCATGATTGACTCCAAGACGTGGTGTCAATCAATTC
TGTATGCTTGATTGCATCAGCTTTGTGCTTTTATGAGCAATTAGCTTTGG
GAGTTACTTTTCATAAAAATAAAATGTTTTGTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAGAAGTAGGCTCTTATGCGGCCAGTCTGT
GTACCGGGTGCTATCCACAGGGACCTGTGGGGCTCTGACTGGCCAGAGCA
GCCAGAGTTACAGCTCTCCAAGGGAGAGGCTAGAGCAAGGCAGGCTGCCA
GGCCTCTTTCGCAGATGCTGCTGTCCTGCAGTTGATTGGTCACAGGTGGC
AGGACACAGCAGGGTGGCTAGGAGCCAAGATGGGACTACCAAGCAGGAAA
TGGCTGTGGTAGGCTCAAGCAGCTTCAGAGGACTAAAGCTTCAGGAAAGA
ATATTCTTCCCTAAAGTGTTACAGCTCAATAAGACACACATTCTCAGATG
GTCTTTGGTGAAACTCTTATACTTTATTCCTTATGGATAGGGTCATATAA
ACATTTTCAGGTGGGTTGGGATCTAAAGGCAGATGTTTTCTTTTGGTTTG
GTCTGAGACATTAGAAATGGCTCATCTACACATGAAAGGGCACCAGGTGT
TGTCCCTACATGACTGATTGTCACAGTCCTCTCCATCCAGTGTCATGGTC
ACATGTTCCAGGACAAGAACCTGGTCTGGAGTAGATTTAAACACCTACCG
TTCTTAATTATGAGAATTGCCAGGGTTTCTGAATCTGCTTGACCTTACCA
GGTTTGCGGTCAAGGATGTGTTTATAAAAAGATAAAGAGAGGAGGCGATG
TGTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_k17.b1 MSMg01no270_k17.b1 CHROMAT_FILE:
MSMg01no270_k17.b1 PHD_FILE: MSMg01no270_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:23 2005
         (323 letters)



>mm_chr14_37700416_37701138
          Length = 723

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcactttatcttcacataactcatagagctattaattcttattttatagtcaga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattctcactttatctgcacataactcatagagctattaattcttattttatagtcaga 463

                                                                       
Query: 65  aatgtaaatcaactaatcagagtgatgttgcaacttgttcaggagaagtaaacataccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatgtaaatcaactaatcagagtgatgttgcaacttgttcaggagaagtaaacataccac 403

                                                                       
Query: 125 aattgaatttcattctaaatccagagcctgcgtcttacagtttattgtagatgacttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aattgaatttcattctaaatccagagcctgcgtcttacagtttattgtagatgacttttt 343

                                                                       
Query: 185 cctctgataaacagtataatgggttcagtataaaggagctaaaagatctaaatagtttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cctctgataaacagtataatgggttcagtataaaggagctaaaagatctaaatagtttta 283

                                                                       
Query: 245 tgtacttccttctagtcttttataaagagataatcttttgtagttcctgatacttttgaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgtacttccttctagtcttttataaagagataatcttttgtagttcctgatacttttgaa 223

                             
Query: 305 tcatataaacatgtttca 322
           ||||||||||||||||||
Sbjct: 222 tcatataaacatgtttca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_k17.g1 MSMg01no270_k17.g1 CHROMAT_FILE:
MSMg01no270_k17.g1 PHD_FILE: MSMg01no270_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:23 2005
         (678 letters)



>mm_chr14_37587414_37588491
          Length = 1078

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagaagtaggctcttatgcggccagtctgtgtaccgggtgctatccacagggacctgt 60
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 201 caaagaagtaggctcttatgcggccagtctgtgtactggatgctatccacagggacctgt 260

                                                                       
Query: 61  ggggctctgactggccagagcagccagagttacagctctccaagggagaggctagagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggctctgactggccagagcagccagagttacagctctccaagggagaggctagagcaa 320

                                                                       
Query: 121 ggcaggctgccaggcctctttcgcagatgctgctgtcctgcagttgattggtcacaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggctgccaggcctctttcgcagatgctgctgtcctgcagttgattggtcacaggtg 380

                                                                       
Query: 181 gcaggacacagcagggtggctaggagccaagatgggactaccaagcaggaaatggctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggacacagcagggtggctaggagccaagatgggactaccaagcaggaaatggctgtg 440

                                                                       
Query: 241 gtaggctcaagcagcttcagaggactaaagcttcaggaaagaatattcttccctaaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaggctcaagcagcttcagaggactaaagcttcaggaaagaatattcttccctaaagtg 500

                                                                       
Query: 301 ttacagctcaataagacacacattctcagatggtctttggtgaaactcttatactttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacagctcaataagacacacattctcagatggtctttggtgaaactcttatactttatt 560

                                                                       
Query: 361 ccttatggatagggtcatataaacattttcaggtgggttgggatctaaaggcagatgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttatggatagggtcatataaacattttcaggtgggttgggatctaaaggcagatgttt 620

                                                                       
Query: 421 tcttttggtttggtctgagacattagaaatggctcatctacacatgaaagggcaccaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttttggtttggtctgagacattagaaatggctcatctacacatgaaagggcaccaggt 680

                                                                       
Query: 481 gttgtccctacatgactgattgtcacagtcctctccatccagtgtcatggtcacatgttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgtccctacatgactgattgtcacagtcctctccatccagtgtcatggtcacatgttc 740

                                                                       
Query: 541 caggacaagaacctggtctggagtagatttaaacacctaccgttcttaattatgagaatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggacaagaacctggtctggagtagatttaaacacctaccgttcttaattatgagaatt 800

                                                                       
Query: 601 gccagggtttctgaatctgcttgaccttaccaggtttgcggtcaaggatgtgtttataaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gccagggtttctgaatctgcttgaccttaccaggtttgcggtcaaggatgtgtttataaa 860

                            
Query: 661 aagataaagagaggagg 677
           |||||||||||||||||
Sbjct: 861 aagataaagagaggagg 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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