BAC Information

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BAC

Clone NameMSMg01-270P14
Chromosome14 (Build37)
Map Location 67,463,706 - 67,616,108
singlet/doubletdoublet
Overlap geneDpysl2, EG432870, Pnma2, LOC672614, Bnip3l
Upstream geneCcdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366
Downstream genePpp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270P14.T7 (MSMg01no270_p14.b1)MSMg01-270P14.TJ (MSMg01no270_p14.g1)
ACCAG410658AG410659
length721745
length of high quality
(start - end)		318 (44 - 361)668 (71 - 738)
definitionCHROMAT_FILE: MSMg01no270_p14.b1 PHD_FILE: MSMg01no270_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:45 2005CHROMAT_FILE: MSMg01no270_p14.g1 PHD_FILE: MSMg01no270_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,463,706 - 67,464,018)(67,615,445 - 67,616,108)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCTAGCTTTGGAGAAGTGACTGCCCAGCCCTGCCAGCACCCTGCTC
TCAGAGACACCGCAAGCCCTCAAACTCACCAGCTCTCACATCCTCAGACC
ACGGGGGCTCACTCATCTGAAAAGATGGAAGGAAATAGTTGCTCATTCAA
ATGTCTGGGGACCAGTGCTATAACTGTGCACTCTGAGCTTGCAGGAAACA
GGGACATGACAAGTCACAGGTCTGGCCTTGAGTCCTAGCACGACCCTTGA
TGAGGTCCAGAAAGCTGAGCAAGTTATTTAACTCCTCAGTGCCTCAACTT
CCCCATCTGTTTTTTATGCACACCACCAGCATCTTGTGGGAAACTGAAAC
CACATTGCCTGGGTTTGCAGCCCAGTACCACTTCTCTCACTGGTTGTAGA
ACCTCAAGGTCCTTGACCCACTCTGGACCTCACTCAGTCTTCTTATCTGT
AAAATAGACATTATTCTAATCACTGCACGCAGGGCTGTTGTGAAATAGCA
GTTAACACGGGAGAACAGGAAGCTGTTTCGTGTGATTCCCAGCCAGTGCT
GTGGTCTCTAAAGCGTAAAGCTCCTGTTGGGGAGACCATCCACGCACCCC
ATCAGCAGGGGAAGGGATGGGAATGAGGGTGGCCTCAAGCAGGGAGTTTC
AGAGGAAGAACAGGGTGTGGG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTTCCCAGGGTCAGCTTAGTTCAGGTTC
CTAAATATGATGAGGAATGGCAAAGGGGCTCCCTGGCCAGCTAGTCCTGC
TGGGACAGTGGGTCCAGTTAGAGACACTACCTTACAAAATAAGATGGAGA
ACAAAGAGGAAAGTAGTGAGAGTCACTTTCAGCTTCTACAGAGACATACA
TTTGAACCTGCACAGATGTGTACACCAAACACACATAACACAACACTGCT
ACAAAATAGGTGCCTTCAATATTTGTGTCATTTGACTTATAATTGGTTAT
TAGGACATGTTTCTTTTGTGACCTACAATGTAGATGGAAGGGTTCTTCGA
ATTGTTGGACATTAGCCCTAGCTGATGTATATTTTCTCTTCTCCTTTTCC
CTTTCATTTCTACCTCCTCTTCCCTACTTTTCTCTTGGTGCTGAGGACTG
AACCCAATGCCTCTAACCTGCTGGACATGAATTGCTCTGCTGAGCTGCAT
CCCTAGCCCTCTTGTGACTCTCTGGTTTTGGAACTGTCCTGCTGAGTTGC
ACAGACTGGGTTTAAACTTGCTGTGTAGCCTGGGGAAGCATTAAACTTGA
AAATTTCCTGACCCAGGGTCTAGAAAAGCTGGGATTTCAGGCCTCCACCA
CTAGGCCTAGCCTGTTTTTCAGGTGTTTTATTTANNAATTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_p14.b1 MSMg01no270_p14.b1 CHROMAT_FILE:
MSMg01no270_p14.b1 PHD_FILE: MSMg01no270_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:45 2005
         (318 letters)



>mm_chr14_67463503_67464220
          Length = 718

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctctagctttggagaagtgactgcccagccctgccagcaccctgctctcagag 63
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattcctctagctttggagaagtgactgcccagccctgccagcaacctgctctcagag 263

                                                                       
Query: 64  acaccgcaagccctcaaactcaccagctctcacatcctcagaccacgggggctcactcat 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaccgaaagccctcaaactcaccagctctcacatcctcagaccacgggggctcactcat 323

                                                                       
Query: 124 ctgaaaagatggaaggaaatagttgctcattcaaatgtctggggaccagtgctataactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgaaaagatggaaggaaatagttgctcattcaaatgtctggggaccagtgctataactg 383

                                                                       
Query: 184 tgcactctgagcttgcaggaaacagggacatgacaagtcacaggtctggccttgagtcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 tgcactctgagcttgcaggaaacagggacatgacaagtcacaggtctggccttgaatcct 443

                                                                       
Query: 244 agcacgacccttgatgaggtccagaaagctgagcaagttatttaactcctcagtgcctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcacgacccttgatgaggtccagaaagctgagcaagttatttaactcctcagtgcctca 503

                        
Query: 304 acttccccatctg 316
           |||||||||||||
Sbjct: 504 acttccccatctg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_p14.g1 MSMg01no270_p14.g1 CHROMAT_FILE:
MSMg01no270_p14.g1 PHD_FILE: MSMg01no270_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:45 2005
         (668 letters)



>mm_chr14_67615322_67616389
          Length = 1068

 Score = 1276 bits (660), Expect = 0.0
 Identities = 663/664 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttcccagggtcagcttagttcaggttcctaaatatgatgaggaatggcaaaggggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 atcttcccagggtcagcttagttcaggttcctaaatatgatgaggaatggcaaaggggct 728

                                                                       
Query: 61  ccctggccagctagtcctgctgggacagtgggtccagttagagacactaccttacaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 727 ccctggccagctagtcctgctgggacagtgggtccagttagaggcactaccttacaaaat 668

                                                                       
Query: 121 aagatggagaacaaagaggaaagtagtgagagtcactttcagcttctacagagacataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagatggagaacaaagaggaaagtagtgagagtcactttcagcttctacagagacataca 608

                                                                       
Query: 181 tttgaacctgcacagatgtgtacaccaaacacacataacacaacactgctacaaaatagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tttgaacctgcacagatgtgtacaccaaacacacataacacaacactgctacaaaatagg 548

                                                                       
Query: 241 tgccttcaatatttgtgtcatttgacttataattggttattaggacatgtttcttttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgccttcaatatttgtgtcatttgacttataattggttattaggacatgtttcttttgtg 488

                                                                       
Query: 301 acctacaatgtagatggaagggttcttcgaattgttggacattagccctagctgatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acctacaatgtagatggaagggttcttcgaattgttggacattagccctagctgatgtat 428

                                                                       
Query: 361 attttctcttctccttttccctttcatttctacctcctcttccctacttttctcttggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attttctcttctccttttccctttcatttctacctcctcttccctacttttctcttggtg 368

                                                                       
Query: 421 ctgaggactgaacccaatgcctctaacctgctggacatgaattgctctgctgagctgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgaggactgaacccaatgcctctaacctgctggacatgaattgctctgctgagctgcat 308

                                                                       
Query: 481 ccctagccctcttgtgactctctggttttggaactgtcctgctgagttgcacagactggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccctagccctcttgtgactctctggttttggaactgtcctgctgagttgcacagactggg 248

                                                                       
Query: 541 tttaaacttgctgtgtagcctggggaagcattaaacttgaaaatttcctgacccagggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttaaacttgctgtgtagcctggggaagcattaaacttgaaaatttcctgacccagggtc 188

                                                                       
Query: 601 tagaaaagctgggatttcaggcctccaccactaggcctagcctgtttttcaggtgtttta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tagaaaagctgggatttcaggcctccaccactaggcctagcctgtttttcaggtgtttta 128

               
Query: 661 ttta 664
           ||||
Sbjct: 127 ttta 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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