BAC Information

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BAC

Clone NameMSMg01-271I17
Chromosome14 (Build37)
Map Location 19,402,482 - 19,402,857
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
Downstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I17.T7 (MSMg01no271_i17.b1)MSMg01-271I17.TJ (MSMg01no271_i17.g1)
ACCAG411067AG411068
length755741
length of high quality
(start - end)		334 (374 - 707)670 (72 - 741)
definitionCHROMAT_FILE: MSMg01no271_i17.b1 PHD_FILE: MSMg01no271_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005CHROMAT_FILE: MSMg01no271_i17.g1 PHD_FILE: MSMg01no271_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTTATCTCTGAGCCCCATTTTTTAATGGGGTAATTTGATTTTTTGAGT
CCACCTTCTTGAGCCCTTTATATATATTGGATAGTAGTCCCCTATCTAAT
TTAGAATAGGTAAAGATACTTTCCCAATCTGTTGGTGGCCTTTTTGTCTT
ATTGATGGTGTCTTTTGCCGTGCAGAAGCTTTACAATTTTATGAGGTCCC
ATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGG
AATTTCCCCCCTGTACCCATCTCTTCGAGGTTTTCCCTACTTTCTCTTCT
ATATGTTTCAGTGCCTCTGGCTTTATGTGGAGTTCCTTAATCCACTTAGA
TTTGACCTTACTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTAC
ATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCCCCC
CCCCCATTGGATGGTTTTTGCTCCCTTGTCAAATATCAAATGACCATAGC
TGTGTGGGTTCATTCCATTTCATCCAGGTTCTCCAGTTTTGTTGAGTATA
GCCTTTTGCAGTAGGATTTGATGGTGTTTTGGAGTTCTTCAGGATCTGTT
ATTATGTCTCTCTTTTCATTTCTGATTTTGTTTGAATTGGGTCTTCAATT
CTATTCCATTGGTCTACTTGTCTGTTGCTATATCAGTACCATGCAGTTTT
TATCA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCAGAAAAGGGGACAGGTTATAAGAGCC
ACAGGGACAGATAGCACCAAGAACAACATGTCTTCCAGACACAATAGGAC
TGACACATATGAACTCCAGAGACCATGGCAGCAAGCAGGGCCTGCACAGG
TTCAAGATAGATGGGGGTCCCAGCTCAGAAATGGGGAAGTAGACATGAAC
TCCCATCCCTATCTAAGAAGCTATCTCCAAATGTCATTGCTTGTGAAGGA
AAGTTTTCTCCAAAGGAGTCTCACCAAGTTTATTAATCACACTTCAGTGG
AGCTCGTAGGCCTCATCTCTAGCAGTGGTGGTCAGCACTAAACAAAATGA
CATTTTTGTAGATTTTCCATCTCATATTAGTTTGATCAGGCTTCTAAAAA
TCTTACTAGTCTTTTTCTTGTATATTATGTTTTCCAATTTTGTGGGAGGT
GTGTGTGTGATATTTATAAAGAGATCCATTCTATAAGTTCTGTTACTCTA
GAGAAGCCTAACATGGCCCTATCTCAGTTTTCTGTTCTGTTTATAAGATA
GAGTTCAGGGAACCTTAGCTTACAACCTGGGTAGCTTTTGGTTCTATGTA
ACAACATGTGAACCCATTCAGCAATGCCATCTCATCTGCCTTTAAAAATT
AGCTGGAAGGTGAGAGTTTGCAGTCTGCCAAGCTCCAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i17.g1 MSMg01no271_i17.g1 CHROMAT_FILE:
MSMg01no271_i17.g1 PHD_FILE: MSMg01no271_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:26 2005
         (670 letters)



>mm_chr14_19401791_19402860
          Length = 1070

 Score =  688 bits (356), Expect = 0.0
 Identities = 371/376 (98%)
 Strand = Plus / Minus

                                                                        
Query: 295  tctctagcagtggtggtcagcactaaacaaaatgacatttttgtagattttccatctcat 354
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tctccagcagtggtggtcagcactaaacaaaatgacatttttgtagattttccatctcat 1008

                                                                        
Query: 355  attagtttgatcaggcttctaaaaatcttactagtctttttcttgtatattatgttttcc 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 attagtttgatcaggcttctaaaaatcttactagtctttttcttgtatattatgttttcc 948

                                                                        
Query: 415  aattttgtgggaggtgtgtgtgtgatatttataaagagatccattctataagttctgtta 474
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 947  aattttgtgggaggtgtgtgtgtgatatctataaagagatccattctataagttctgtta 888

                                                                        
Query: 475  ctctagagaagcctaacatggccctatctcagttttctgttctgtttataagatagagtt 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  ctctagagaagcctaacatggccctatctcagttttctgttctgtttataagatagagtt 828

                                                                        
Query: 535  cagggaaccttagcttacaacctgggtagcttttggttctatgtaacaacatgtgaaccc 594
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  cagggaaccttagctgacaacctgggtagcttttggttctatgtaacaacatgtgaaccc 768

                                                                        
Query: 595  attcagcaatgccatctcatctgcctttaaaaattagctggaaggtgagagtttgcagtc 654
            |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 767  attcagcaatgccatctcatctacctttaaaaattacctggaaggtgagagtttgcagtc 708

                            
Query: 655  tgccaagctccaatgg 670
            ||||||||||||||||
Sbjct: 707  tgccaagctccaatgg 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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