BAC Information

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BAC

Clone NameMSMg01-271M21
Chromosome14 (Build37)
Map Location 96,577,669 - 96,577,965
singlet/doubletsinglet
Overlap geneKlhl1
Upstream geneLOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271M21.T7 (MSMg01no271_m21.b1)MSMg01-271M21.TJ (MSMg01no271_m21.g1)
ACCAG411256AG411257
length775742
length of high quality
(start - end)
297 (64 - 360)365 (378 - 742)
definitionCHROMAT_FILE: MSMg01no271_m21.b1 PHD_FILE: MSMg01no271_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:46 2005CHROMAT_FILE: MSMg01no271_m21.g1 PHD_FILE: MSMg01no271_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TATAGTTTCACTAATTCTATAACATGTGACTTTTAGTCCTCTGAATGATA
CAATTACACTCATTTTTGCGTTAAAATATAAAGCCTTAACTTCATAACAA
CAAATAAGTTACCAAATTTTATTACCTATAACATTTTACTACTACAATAT
TTAAATAAATGGCTAAGTAAGTTAAAAAAATATTTGCACTAATTTAAGAT
CATAAGACTTTCTCATGTTGTGTTAAGATAAATACAGTCATTTGACTGGA
TATCTCACAATAGACATAAAAACTTTATTTTAAGAGGAATTAAAGAAAAT
CAATGATTTGTTTTTTTGCCACCACCATACCTGGGAATGTGTGCTTAATT
AAAGTCAAACTAATAAATGTAAACATAAACAACAACTTTCGAAGTATCTC
AGTGGCAGAATGATTGCATGAGGTGTTAGGGTTAATCATTAGTGACAAAA
GGTTAATAAATAAACATAAAATAATTATATAACTGTTATTCAGTATGACT
GGATGCATATCACTCAAATCTTTAAAGTATTCTTTAAGCGTTTACTCAAT
GTCTTGGAGAAAATAATGTGCAAGGAATTATGCCCTGGTTCAGAACTTGA
TAGGAGGCTTCCTTTTCAGAGAAGAAATCACATGAGGACAGACTTAGTTG
CAAAGATTTCTGAGCATCCTTGTAAGCTTAATTAAATTGCTCCACCTCTG
AGCTTCAGTTTCTTGTTCATAAAGT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATCAAAATTCCAATACAATTCTTTTC
AGACCATAAAGAAAAATTCTCACCTTCAAATGGAAAACCAAAAACACATG
TCAGCTAAAATATTCCAGTACAATAAAAGAACTTCTGGAAGAATCACCAT
CTCTGATTTCAAGCTGCTTATAGGGCAAAGTAAGAAAAAAATGGATGGTA
TAATAGAAACACACAGGTTGATTATGGAATCATATCAAAGCCCCAGAAAT
GAACTCACACACCTATGTGCATTTGATTTTTGACAAAGAAGCCAAACCGT
ACCATGGAAAAGAGATATTCATCTTCAACAAATGATGCTGGTCTTACTGG
ATGTCTGGAGGTAGAAGAATGAAAGTAGATTCTTATTTATTATCCAGTAG
AAAACACATGTTCAAGTGTATCAAAGACTTCAATGTAAGACCAGATAAAG
TGAATCTAATAAAACAGATACTAGGAAATAGTCTTCATATCATTGGTACA
GGATACAACTTCCTGAACAGGACCCATTTAGCTCAGGAACTATGATCAAC
AATTAGCAAATGGGATTTTTTTTCCTGATTTTATAGTCTTCTTTTATTTA
TCAAGACATTTTCATTAGATATTTTCTTCATTTACATTTCAAATGCTATC
CCCAAAGCTCCCTATATCCTCCCCATGTCCTGCTCCCCAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_m21.b1 MSMg01no271_m21.b1 CHROMAT_FILE:
MSMg01no271_m21.b1 PHD_FILE: MSMg01no271_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:46 2005
         (297 letters)



>mm_chr14_96577469_96578165
          Length = 697

 Score =  453 bits (234), Expect = e-132
 Identities = 282/298 (94%), Gaps = 2/298 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctataacatgtgacttttagtcctctgaatgatacaattacactcatttttgcgtta 60
           ||||| |||||||||||||||||||||||| |||||| ||||||||||| || || ||||
Sbjct: 201 attctgtaacatgtgacttttagtcctctggatgataaaattacactcacttgtgagtta 260

                                                                       
Query: 61  aaatataaagccttaacttcataacaacaaataagttaccaaattttattacctataaca 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatataaagacttaacttcataacaacaaataagttaccaaattttattacctataaca 320

                                                                       
Query: 121 ttttactactacaatatttaaataaatggctaagtaagttaaaaaaatatttgcactaat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttttactactacaatatttaaataaatggctaagtaagttagaaaaatatttgcactaat 380

                                                                       
Query: 181 ttaagatcataagactttctcatgttgtgttaag-ataaatacagtcatttgactggata 239
           ||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||
Sbjct: 381 ttaagatcataagactttctcattttgtgtta-gcataaatacagtcacttgactggata 439

                                                                     
Query: 240 tctcacaatagacataaaaactttattttaagaggaattaaagaaaatcaatgatttg 297
           |||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||
Sbjct: 440 tctcacaatacacataaaaattttattttaagaggaatttaagaaattcaatgatttg 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)