BAC Information

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BAC

Clone NameMSMg01-272F09
Chromosome14 (Build37)
Map Location 75,793,909 - 75,794,196
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13
Downstream geneGm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F09.T7 (MSMg01no272_f09.b1)MSMg01-272F09.TJ (MSMg01no272_f09.g1)
ACCAG411650AG411651
length758761
length of high quality
(start - end)
---288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no272_f09.b1 PHD_FILE: MSMg01no272_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:28 2005CHROMAT_FILE: MSMg01no272_f09.g1 PHD_FILE: MSMg01no272_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGACACAAACCACGAATCTCAC
CGATTATCCCAGTGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATGTG
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCATGAATTTGAATTTGTTCTATCTATAGCCT
CAGGGCTGGCCCCATGCTTAGAAAATGACCCATCTAGTCTAATTTGATGG
GTGCCCGGAATGGGCCATCTGCTCAAAAATAATTCTTGTTCTGATTCCAG
AAAATTCACCATCAGAGTTTAACTTAATAAATCAACAAATAATTTGATGG
ATAATTAAAGTCAGTAAATATTTACGAAATACTTAACGGCTTGCAAAGGA
CTGAAGATTGCAAAAAGATAGATGGCACAGTTTCTGCCTGCAAGGACTTT
CAGCAGGTTTTTATGATAACCCCCCCAAATATTCAGATGCAGAGATGGCA
CGGGCTTCCCCAGTGTCTCTTACAATCTCTAGGCAGTTTCACCAGGGAGG
GAATAGAAACGATGCCCCTATGCGTCTATAGGCCTTTGGAGTTTGATAGG
AGATGATTCTCATGTGTGTTGACTGGGTCCCTTCCGATGAAATCTCTCTC
CCTCTGAGCCTGTTTCATTTATCTAGAAAAATATTAATATCCTCCTGCTC
CTCCTCCTCTCCACGTAGCTCTGAGACTGATGGGAATAAACATTGCAAAA
GCACTTCAGACACGACATCGCCCCAGCAGCAGACTAAAGACAAGGGTCAA
CTCCCACTTTTCCGAGTAGAAGAATCTGGAAGTGTCATTCCCAGCCTCAA
CAAACCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f09.g1 MSMg01no272_f09.g1 CHROMAT_FILE:
MSMg01no272_f09.g1 PHD_FILE: MSMg01no272_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:28 2005
         (288 letters)



>mm_chr14_75793709_75794396
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcatgaatttgaatttgttctatctatagcctcagggctggccccatgcttagaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atcatgaatttgaatttgttctatctatagcctcagggctggccccatgcttagaaaatg 429

                                                                       
Query: 61  acccatctagtctaatttgatgggtgcccggaatgggccatctgctcaaaaataattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 acccatctagtctaatttgatgggtgcccggaatgggccatctgctcaaaaataattctt 369

                                                                       
Query: 121 gttctgattccagaaaattcaccatcagagtttaacttaataaatcaacaaataatttga 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gctctgattccagaaaattcaccatcagagtttaacttaataaatcaacaaataatttga 309

                                                                       
Query: 181 tggataattaaagtcagtaaatatttacgaaatacttaacggcttgcaaaggactgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggataattaaagtcagtaaatatttacgaaatacttaacggcttgcaaaggactgaaga 249

                                                           
Query: 241 ttgcaaaaagatagatggcacagtttctgcctgcaaggactttcagca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttgcaaaaagatagatggcacagtttctgcctgcaaggactttcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)