BAC Information

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BAC

Clone NameMSMg01-272G12
Chromosome14 (Build37)
Map Location 27,317,696 - 27,317,982
singlet/doubletsinglet
Overlap geneSlmap
Upstream geneZmiz1, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik
Downstream geneLOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272G12.T7 (MSMg01no272_g12.b1)MSMg01-272G12.TJ (MSMg01no272_g12.g1)
ACCAG411700AG411701
length719721
length of high quality
(start - end)
313 (46 - 358)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no272_g12.b1 PHD_FILE: MSMg01no272_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:33 2005CHROMAT_FILE: MSMg01no272_g12.g1 PHD_FILE: MSMg01no272_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTCTGACGAAACAGACTGGGAGGAAGAAGCAGCCCATTACCAG
CCAGCTAATTGGTCAAGAAAAAAGCCAAAAGCGGCTGGCGAAAGCCAGCG
TACTGTTCAACCTCCGGGCAGTCGGTTTCAAGGTCCGCCCTATGCGGAGC
CCCCGCCCTGCGTAGTGCGTCAGCAATGCGCAGAGAGACAATGCGCAGAG
AGGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAGTGCGCAGAGAGGCA
GTGCGCAGAGAGGCAGTGCGCATAGAGGCAGTGCGCAGAGAGGCAGTGCG
CAGACTCATTCTTTTTCAGACACCACCCCCCGAAAATACAACAGGCATTT
CCGGTCTTTGAAGGAGCCGAGGGTGAAAGTGTCCACGCTCCGGTAGAATA
CTTGCAAATTAAAGAACTTGCCGAGTCGGTCCGTAAATACGGAACCAATG
CTAATTTTACCTTGGTGCAGTTAGACAGGCTCGCCGGCATGGCACTAACT
CCAGCTGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAGTATGGGCAA
ATATATGGAATGGAGAGCGCTTTGGCACGAAGCTGCACAAGCGCAGGCCC
GAACAAACGCAGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTTGAC
TTGTTAACGGGTCAGGGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAAGATTACAATTTATTTAGA
AAAAGAAATGTATATAAACTCTTAAGTGTATGTTTTCTAAGAAAGGACTA
AATTATTGGTGGCAAAGTGAGCAATCATGACCTCCCCACTTCTGGTGACT
CTGACTGCTGCTATGTCATCAGAGAGATTAGAATAGTTTTCCTAAACCAT
TTAAAAAAAAAATCTGTGAGGTTGTTGGGAAAGTAGCAGAGAAGTTAGAA
ACAAATGCACTAAAAATTCTCTTATCACTATCATCATTCCAGGCACCAGC
AGATGGACCCATTTTTTGGACCCCCCCCCCTCCAGTATTGGTGTCAAAAC
TTTGTATGCAGGAGTCTCCCATGCCTGAACCAGTTATTAGGCCGAGTAAA
AGCTGTTTCCTGGTGCTCTGAGTGGGTAGTGTCTCCAGTTTCACTTTGCG
TGGTGGTCTTGCTGTCCACTCTCTGTCCATCTGGTGTCTGCAAAATACCT
GGAGAGCAAGGAGGCGGCGGGGTCAGGTAGCTTTCTACCTCACAGGCTTC
TGGAGCAGCACAGGAGGATGTGACCAGGGTTGACAGGATACTTGCAAAAC
TAGGACAGAATAAAACCCCGTAATGTGAAGCCCTGCCTACCTCTCTGCCT
CTGAGGAAGCTGCCTAGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_g12.g1 MSMg01no272_g12.g1 CHROMAT_FILE:
MSMg01no272_g12.g1 PHD_FILE: MSMg01no272_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:33 2005
         (286 letters)



>mm_chr14_27317496_27318183
          Length = 688

 Score =  528 bits (273), Expect = e-154
 Identities = 283/287 (98%), Gaps = 2/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaaagattacaatttatttagaaaaagaaatgtatataaactcttaagtgtatgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttaaagattacaatttatttagaaaaagaaatgtatataaactcttaagtgtatgtttt 428

                                                                       
Query: 61  ctaagaaaggactaaattattggtggcaaagtgagcaatcatgacctccccacttctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctaagaaaggactaaattattggtggcaaagtgagcaatcatgacctccccacttctggt 368

                                                                       
Query: 121 gactctgactgctgctatgtcatcagagagattagaatagttttcctaaaccattt--aa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 367 gactctgactgctgctatgtcatcagagagattagaatagttttcctaaaccatttaaaa 308

                                                                       
Query: 179 aaaaaaaatctgtgaggttgttgggaaagtagcagagaagttagaaacaaatgcactaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaaaaaaatctgtgaggttgttgggaaagtagcagagaagttagaaacaaatgcactaaa 248

                                                          
Query: 239 aattctcttatcactatcatcattccaggcaccagcagatggaccca 285
           || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 247 aaatctcttatcacgatcatcattccaggcaccagcagatggaccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 688
Length adjustment: 9
Effective length of query: 277
Effective length of database: 679
Effective search space:   188083
Effective search space used:   188083
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)