BAC Information

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BAC

Clone NameMSMg01-272J16
Chromosome14 (Build37)
Map Location 58,067,157 - 58,067,410
singlet/doubletsinglet
Overlap geneIft88
Upstream geneRnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096
Downstream geneIl17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J16.T7 (MSMg01no272_j16.b1)MSMg01-272J16.TJ (MSMg01no272_j16.g1)
ACCAG411843AG411844
length826735
length of high quality
(start - end)
44 (66 - 109)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no272_j16.b1 PHD_FILE: MSMg01no272_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:48 2005CHROMAT_FILE: MSMg01no272_j16.g1 PHD_FILE: MSMg01no272_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTGCGGCCCCAAACGACTCACANATCGAAAAAACCGCGGAATTCTG
TTATNATGCCAAAAAACATATAGCCTGGGTTTCTAGTGTTTCCATTCTTG
TGTCCAGTGTATATCCCCCCATTGATGTTGAAGATAAAATTGGGATTATT
GAAANNAAAAAAAAAAAAAAAAAANNANANNNNAAANNAAAAAAAAAAAA
AAAAAAAANAAAAAAAAATATAAAAAAAACACAAAAAAAAAAAATAACAA
AAAAAAAACAAAACAACCCCCCACCCCCCCACACCACCACCCCCCACCTA
ACCCCACACCCACCATTTCCTCACCACACCAAAACAAACCCACCCACCCA
AAAAAAATAATATCCCCCCCCCCCCCCCCCCCCCAATTAAAAAAAAAAAA
TAAAACTCACACAACCCCCCCCCACCCCACAAAACAAAAAAAAACACCCC
CCCCCCCCCCCACACACAACACACACCCCCCACCCCCCCCCCCCCCAACC
ACACACACAACCAAACTCAACCACACACCAACACCCCCCAAACCCCCAAA
CACACCACCACACCCAACACACACCCAACCACCTCAACCCCCACACACCC
CCCCAACCACAAACCACACACACCCCCCACCACACACACCCACACCCAAA
CACACCCCACACAAAAACACACCCAACCAACCAACCCACCCTCCACACCC
ACACACACACAACAAACCACACCAACCCAAAAACCCACCACACCCCAACA
CACCAAAAAAAACCACACCCCAAACCACCCCCACACACACCACAACCACA
CCAACAAAAACCACCCCCACCCCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCGATGGTGGACTGAAACCTTCAAGC
TAAATTGAACTTTCCATACCTAAGTTGGTTTGGTCAGTGTTTTTATCAGA
ATAGTAAGAACAAACTAGAACAGTAATACTGAGAGTTGACACTAGGCTTT
GCACATGTTCTACCACTGAGCCATATACCCTGCCCATCTACCATGGAACC
GAAAATTCTTGTTTTGTTTTGTTTTGTTTTGTTTTGCTTTGTTTTGTTTT
GTTTTGTTTTGTTTGACATAGGATCTTATTAGCCCAGACTAGCCTCAAAC
TTGCTTTGTATTTATTGCCGCCCCCCCCCCCTTCTGATACTGCCTTCACT
TTCTGAATATAGTGCTAAGATTACAAGCATATGCCTCTATGCTTATTCAA
TCTTGGGGACTAAACTCAGGGCTTCATGGATCACAGGCAAACATTCTATC
AACTGAACTACATCCTCTATACCCTCGGCCTCTGAAAAGTCTTGTTTTCA
AAGAATTTAAAGAGGGAATATTATATAATATTAAGAGGTATAGGTATTTT
ACACATGAGAAACTGGTAGAAAATACACTAAAATAGAAACAATAGTTCCT
GGCAGTTGGATGCTGTTGCTTCTTCCTCTTCTTTCTCCTCCTTCTTATTT
TTTCTTAATACTTTGAAGAAATTTCCCAAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j16.g1 MSMg01no272_j16.g1 CHROMAT_FILE:
MSMg01no272_j16.g1 PHD_FILE: MSMg01no272_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:48 2005
         (287 letters)



>mm_chr14_58066957_58067644
          Length = 688

 Score =  375 bits (194), Expect = e-108
 Identities = 247/284 (86%), Gaps = 31/284 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcgatggtggactgaaaccttcaagctaaattgaactttccatacctaagttggtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcgatggtggactgaaaccttcaagctaaattgaactttccatacctaagttggtttg 260

                                                                       
Query: 61  gtcagtgtttttatcagaatagtaagaacaaactagaacagtaatactgagagttgacac 120
           ||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 261 gtcagtgtttttatcagaacagtaagaacaaactagaacagtagtactgcgggttgacac 320

                                                                       
Query: 121 ta-ggctttgcacatgttctaccactgagccatataccctgcccatctaccatggaaccg 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 taaggctttgcacatgttctaccactgagccatataccctgcccatctaccatggaaacg 380

                                                                       
Query: 180 aaaattcttgttttgttttgttttgttttgttttgctttgttttgttttgttttgttttg 239
           |||||||||||||||||||||||||||||||||                           
Sbjct: 381 aaaattcttgttttgttttgttttgttttgttt--------------------------- 413

                                                       
Query: 240 tttgacataggatcttattagcccagactagcctcaaacttgct 283
              ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 414 ---gacataggatcttattagcccaggctagcctcaaacttgct 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)