BAC Information

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BAC

Clone NameMSMg01-272K24
Chromosome14 (Build37)
Map Location 37,713,831 - 37,714,149
singlet/doubletsinglet
Overlap geneGcap14
Upstream geneLOC665933, 4930474N05Rik
Downstream geneLOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272K24.T7 (MSMg01no272_k24.b1)MSMg01-272K24.TJ (MSMg01no272_k24.g1)
ACCAG411903AG411904
length730731
length of high quality
(start - end)		322 (45 - 366)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no272_k24.b1 PHD_FILE: MSMg01no272_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:54 2005CHROMAT_FILE: MSMg01no272_k24.g1 PHD_FILE: MSMg01no272_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGCTCTTACTTGTTCTTTTTCTGTATTTAAGCTAGGGGGAATTG
GAATTCAAGTGGATGCTGGTGATTATTGTATTCATCTTTCATTTGTTCTC
TTTTTTTCCTGGTAGCATGACGGAAGTGGATCATTGCATGATGTTCAGCT
CTCATTGCCATCCAGTCCAGAGCCAGAAGACGGTGATCAGATATATAAGG
TATGGCTAGGTATTTACACTGAAGATTTCAGAGTTTTTTGTATAAAATAA
TACAGCAGCAACATGTTAAGCTATGAATAATAGCGGTATCAAAAAACTAA
AGCTTTTAGCAGGCTGTAGTGGCATATGCCTTAGATCCTACCACCCAGTG
AGCAGATTTGAAGTCTGCCTGTGCTGCACAGTGGGTTCAAGGCCAGCCCA
GACAACTTAGTGATATAATGTCACAAAAATGATCTGAGGTTGTAGCTTCA
GTGGCCAAATACTTGTTTAACATCTATAAGGCCATGCATGAGATCAATTC
CTAGTCTAGGAAACAGGCCAACCTAGAGCTTTGCTGTCTGGAAAAACCAT
TAGATTTCCTTTGAACCTTTGCCATTGTATGATACTAAAATGGTAGTCCA
GTGATGCTTCACTTTANATCATTCCTGGTCAGGTGGAAAGTAACTTGCCT
CTGTAACTACTGTTGCTTATACCCATGAGN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCAA
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCAGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAA
TTTTATTAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTTTTTCTTTCCCGCCCCCCCACGTATCAGAGTAATA
GTGGCTTCATAAAATGAGTTGGGTAGAGTAACTTCTACTTCTATTTTGTG
AAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGA
ACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTA
TTAATAACTGCTTCTATTTCCTTAGGTGATATGGGACTGTTTAGATGGTC
TACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGT
CCATTTCGTCCAGGTTTTCCAGTTTTGCTGAGAATACCCTTTTGTACAAG
GATCTGATGGTGTTTTGGATTTTTCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_k24.b1 MSMg01no272_k24.b1 CHROMAT_FILE:
MSMg01no272_k24.b1 PHD_FILE: MSMg01no272_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:54 2005
         (322 letters)



>mm_chr14_37713628_37714349
          Length = 722

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%), Gaps = 2/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttagctcttacttgttctttttctgtatttaagc-tagggggaattggaattc 62
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 522 ggaattcttagctcttacttgttcttttcctgtatttaagcttagggggaattggaattc 463

                                                                       
Query: 63  aagtggatgctggtgattattgtattcatctttcatttgttctctttttttcctggtagc 122
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 462 aagttgatgctggtgattattgtattcatctttcatttgttctc-ttttttcctggtagc 404

                                                                       
Query: 123 atgacggaagtggatcattgcatgatgttcagctctcattgccatccagtccagagccag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgacggaagtggatcattgcatgatgttcagctctcattgccatccagtccagagccag 344

                                                                       
Query: 183 aagacggtgatcagatatataaggtatggctaggtatttacactgaagatttcagagttt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagacggtgatcagatatataaggtatggctaggtatttacactgaagatttcagagttt 284

                                                                       
Query: 243 tttgtataaaataatacagcagcaacatgttaagctatgaataatagcggtatcaaaaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttgtataaaataatacagcagcaacatgttaagctatgaataatagcggtatcaaaaaa 224

                               
Query: 303 ctaaagcttttagcaggctg 322
           ||||||||||||||||||||
Sbjct: 223 ctaaagcttttagcaggctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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