Query= MSMg01no273_l23.b1 MSMg01no273_l23.b1 CHROMAT_FILE:
MSMg01no273_l23.b1 PHD_FILE: MSMg01no273_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:11 2005
(309 letters)
>mm_chr14_89532669_89533377
Length = 709
Score = 590 bits (305), Expect = e-173
Identities = 308/309 (99%)
Strand = Plus / Minus
Query: 1 ttgttttatggaattcaataataattaatagtagtttcagcaaatcaataatgaattctt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 509 ttgttttatggaattcaataataattaatagtagtttcagcaaatcagtaatgaattctt 450
Query: 61 gatatagaaatctcatagactatgattttaaaacttctgcgtactcacagaatataactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatatagaaatctcatagactatgattttaaaacttctgcgtactcacagaatataactt 390
Query: 121 tcctaaatatatcattaagatagaactgtttcttttgaaatagatcaggaaggtcttttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcctaaatatatcattaagatagaactgtttcttttgaaatagatcaggaaggtcttttc 330
Query: 181 ttacacacagtgaatagtttaatatgtggttgcaaaattcaaaaatatactaaagtataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttacacacagtgaatagtttaatatgtggttgcaaaattcaaaaatatactaaagtataa 270
Query: 241 atatgtgataaaattatagaattatacttgatactaaaaagatatataccaaaataaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atatgtgataaaattatagaattatacttgatactaaaaagatatataccaaaataaaaa 210
Query: 301 taaacttta 309
|||||||||
Sbjct: 209 taaacttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_l23.g1 MSMg01no273_l23.g1 CHROMAT_FILE:
MSMg01no273_l23.g1 PHD_FILE: MSMg01no273_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:11 2005
(286 letters)
>mm_chr14_89381540_89382229
Length = 690
Score = 503 bits (260), Expect = e-147
Identities = 280/288 (97%), Gaps = 4/288 (1%)
Strand = Plus / Plus
Query: 1 acttatgattaaaccatcaaaggtaatggctaggttcaaattttaattattctaactact 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 acttatgattaaaccatcaaaggtaatggctaggttcaaattttaattattttaactact 260
Query: 61 taaaacaccgtgtttctgttttattcttaaattcaactacagatttcaaaatggtaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaacaccgtgtttctgttttattcttaaattcaactacagatttcaaaatggtaaagg 320
Query: 121 agccaagcaagctggcagatgagtcgaagggtatttggcgccatctggtggcaaatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccaagcaagctggcagatgagtcgaagggtatttggcgccatctggtggcaaatataa 380
Query: 181 ttatttccccggttattatt---tttttccatgttggtcgttaatcctacgaataaaagt 237
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttatttccccggttattattatttttttccatgttggtcgttaagcctacgaataaaagt 440
Query: 238 ccatagttttatttcttct-ttcactgagaaacttacctatctgtaga 284
||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccatagttttagttcttccattcactgagaaacttacctatctgtaga 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 690
Length adjustment: 9
Effective length of query: 277
Effective length of database: 681
Effective search space: 188637
Effective search space used: 188637
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
