BAC Information

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BAC

Clone NameMSMg01-275J14
Chromosome14 (Build37)
Map Location 101,415,593 - 101,415,823
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275J14.T7 (MSMg01no275_j14.b1)MSMg01-275J14.TJ (MSMg01no275_j14.g1)
ACCAG414004AG414005
length752755
length of high quality
(start - end)
259 (381 - 639)234 (125 - 358)
definitionCHROMAT_FILE: MSMg01no275_j14.b1 PHD_FILE: MSMg01no275_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:21 2005CHROMAT_FILE: MSMg01no275_j14.g1 PHD_FILE: MSMg01no275_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAGAGTTTTATCATGAATGGGTGTTGGATTATGT
AAAATGCTTTCTCCGCTTCTCCCGAGATGATCATGTGGTTTTAGTTTTTG
AGTTTGTTTATATACTGGATTACATTGATGGATTTCTGTATATTGAACCA
TCCCTGCATCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGAATGGAT
GATTGTTTTGATGTGTTCTTGGATTTGGTTAGCGAGAACTTTATTGAGGA
TTTTTGCATCAATATTCATAAGGGAAATTGTTCTGAAGTTCTATATCTTT
GTTGTTNCTTTTTGTGCCCCCCCCCCCTAGAGTAATTGTGGCTTCATAGA
ATGAGTTGGGTAGAGCTTCTATTATGAGGAATAGTTTGTGAAGAACTGGG
ATTAGATCTTCTTTGAAGGTCTGATAGAACACTGCACTAAACCCATCTAT
CTGGTCCTGGGCTTTTTTTGTTTGGGAGACTATTAACTACTGCTTCTATT
TCTTTAGGGGATATAGGACTGTTTAGATCATTAACCTTATCTTGATGTAA
CTTTGGTTCCTGGTATCTGTCTAGAAACTTGTTTATTTCATCCAGGTTCT
CCAGTTTTGTTGAGTATAGCCTTTTGTTGAAGGATCTGATGGTGTTTTGG
ATTTCTTAGGATCTGTTGTTATAAGTGACCCTCAAAATTCCCCCAGAGAA
CT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTATAATAAAATATCTTTTACCA
TTGCTTTTATAGCAAATTGTACCCATAATATAAATGTACAGTAAGAAATG
ATTAATGAACCACATTTCTCGCTCTTCCAGAATATTATGCAACAATTAAA
ATGTAATTTGTGAAAGAGTATAATCACACAGTAAGGTGTTGTTATATAAT
ATTAATGAGACCTACAGTTTTAAAGCACACATATACTATTAAATCTCAAT
TTAGTCATATTTAATGCTTAAAAACTGTAAAATTATTAATAATAATCATA
TAAGATATTATTTGTTTTTCCCCAACACACTTTTGTGGTAATAATTTGCA
AGATTTGTGAAATTGCTGGTTTCTCTTTATGGCTTCGACATATTCCAGTT
TTGTACTTCACAGTAGGAAGAATCTAACCATATTCTGTAAAACTGTTTCC
CCTGCTTTGATTAGATTTAGGATACTTAATCAATTTACTCACTTCTGGCG
CCATGTTATATTAGTTAAATCTCAGCTGAGTGCTTAGTCATAACATTTCA
CGCTCATGGGTAAAATATTTTAAGTTATTTTGGTAATCAGTTAAACAGAG
TGGTTTTACTACACAAGATACCCCAAACCAGAAACATTACTCACTAGTAT
GCATCTAAAATTACNAATGTTTTTCTCTTTCCTTTTTTTTTTCTTGTCCC
CATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_j14.g1 MSMg01no275_j14.g1 CHROMAT_FILE:
MSMg01no275_j14.g1 PHD_FILE: MSMg01no275_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:22 2005
         (234 letters)



>mm_chr14_101415393_101416026
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatataaatgtacagtaagaaatgattaatgaaccacatttctcgctcttccagaata 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ataatataaatgtacagtaagaaatgattaatgaaccacatctctcgctcttccagaata 260

                                                                       
Query: 61  ttatgcaacaattaaaatgtaatttgtgaaagagtataatcacacagtaaggtgttgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgcaacaattaaaatgtaatttgtgaaagagtataatcacacagtaaggtgttgtta 320

                                                                       
Query: 121 tataatattaatgagacctacagttttaaagcacacatatactattaaatctcaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataatattaatgagacctacagttttaaagcacacatatactattaaatctcaatttag 380

                                                              
Query: 181 tcatatttaatgcttaaaaactgtaaaattattaataataatcatataaga 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatatttaatgcttaaaaactgtaaaattattaataataatcatataaga 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)