BAC Information

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BAC

Clone NameMSMg01-276E08
Chromosome14 (Build37)
Map Location 107,619,310 - 107,619,662
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043807, LOC100043476, LOC100043809, LOC668736, EG668738, EG668739, LOC621487, EG668743, LOC100043811, LOC621499, LOC100043814, EG668742, LOC668748
Downstream geneLOC668752, EG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276E08.T7 (MSMg01no276_e08.b1)MSMg01-276E08.TJ (MSMg01no276_e08.g1)
ACCAG414502AG414503
length760760
length of high quality
(start - end)
368 (382 - 749)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no276_e08.b1 PHD_FILE: MSMg01no276_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:11 2005CHROMAT_FILE: MSMg01no276_e08.g1 PHD_FILE: MSMg01no276_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTCTGCACACATATATAGACACACAGACACACAAAATCTTCA
ATTAGGAGATGGAAACCTACTCCCTAGAAAATACAAATATAAGAGGGATC
AAAGGAGGAGAAACGTGAGCTATTGAAATGAGGAAAGGAAGGTGAGAAAA
AGTGCAACTGCATTATCATTAATTGTGAAGAACAAAAATCACTGTCGTTC
ACTCTCCATTCAAGTTCTCCTGACTTATAAATACAAAACACTTGAGGTAT
CTCAGAACAAAGGACTAATTCTTCCTAAGGTTCTTCATAATGTAAAATAT
AGACATAACTTTTACTACACATTGCTACCACATTGAAGAGATCCTTTACT
CATGCTATAAACTACATATTACTCTTATTTGGGACTCTATACATATTGTT
CCTAACAATATTTCATATCCCTGTATTACACAGCAGCCTGGATAAATAAG
TAATGGAGTATATTTCTAGTGTCAGTTGGCTAAATCAAATTTCTTTTTCT
ACAAACACTTATTGTACTGTTCCTAATTTTATTTATGAAGAGCTAAACAT
GAAATTTTCTTCAATGATTTAATAGACTATGTTTAAATGCTTATGTAGAC
TTTTAAAATTATAATTATATTTTTGGAATTCTAATAAACACATGGATTTG
ACTGTTGGCTCAATGAGAAATTTAAGCACCTCCTTAATGTAACCTTATTA
ATGTGTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCTTACAAGGCT
TGTTTACTAGTTAGGCATTGCGCAGGCCCGTGCCATCTTATAATAGCGAT
TGCTCGCGGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACACACGC
GATTGCTCGCAGCACATACCGGCTCTCCACATCTCCCCCTTTTTATTTTA
TTAAAATTTGAGGCTGGTCTTGGTCTGTGTAATTATGCCCATCCACTGTG
GCTCCTGTCTTAGGTCGTTCCTCCAATGTCACAGCCTTTCCTGTCATAGG
GTAACCCTATCGTTATCGGGTCCCGTGTCTTAGGTTGATCTGTGCATGAG
GAAAGTTGCCCGTCCCTGGATACCGCAGTGCTATGTGACATTAACTACTA
AGTGACCTAGGGCGAACTCTATAAAAGAGGCCAGCCACCAATGTCAATTA
ATTTTTGAGCATAGATAGCCAGATTTCAGGGGAGGCCCCTTGCTCGATGG
CAGCAAGTGCTTGAGTTATTACAACCTTGTCACGTGTTTGTTGGGTTCTG
AGCTTGCAAACCAACCAGAGCATGACCACAAGTCCACAGCAGGTGGCAAC
GCCAAATGAACGTACCCCCACCCATTCCTTAAAATAAGAAAAGGCAGATG
AAATCCAGGAGGAGAGGCCCTCTGTCAATGACAGGTCCACTCGTGTCGAG
TTGATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_e08.b1 MSMg01no276_e08.b1 CHROMAT_FILE:
MSMg01no276_e08.b1 PHD_FILE: MSMg01no276_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:11 2005
         (368 letters)



>mm_chr14_107619194_107619961
          Length = 768

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  tactcatgctataaactacatattactcttatttgggactctatacatattgttcctaac 75
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 469 tactcatgctataaactacatattactcttatttgggactctatatatattgttcctaac 410

                                                                       
Query: 76  aatatttcatatccctgtattacacagcagcctggataaataagtaatggagtatatttc 135
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 409 aatatttcatatccctgtattacacagcagcctgcataaataagtaatggagtatatttc 350

                                                                       
Query: 136 tagtgtcagttggctaaatcaaatttctttttctacaaacacttattgtactgttcctaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tagtgtcagttggctaaatcaaatttctttttctacaaacacttattgtactgttcctaa 290

                                                                       
Query: 196 ttttatttatgaagagctaaacatgaaattttcttcaatgatttaatagactatgtttaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttttatttatgaagagctaaacatgaaattttcttcaatgatttaatagactatgtttaa 230

                                                                       
Query: 256 atgcttatgtagacttttaaaattataattatatttttggaattctaataaacacatgga 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 atgcttatgtagacttttaaaattataattatatttttggaattctaataaacacatgga 170

                                                                
Query: 316 tttgactgttggctcaatgagaaatttaagcacctccttaatgtaaccttatt 368
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tttgactgttggctcaatgagaaatttaagcacctccttaatgtaaccttatt 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)