BAC Information

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BAC

Clone NameMSMg01-277B22
Chromosome14 (Build37)
Map Location 78,788,466 - 78,789,107
singlet/doubletsinglet
Overlap genenone
Upstream geneD230005D02Rik, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
Downstream geneLOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277B22.T7 (MSMg01no277_b22.b1)MSMg01-277B22.TJ (MSMg01no277_b22.g1)
ACCAG415110AG415111
length794770
length of high quality
(start - end)
125 (35 - 159)642 (74 - 715)
definitionCHROMAT_FILE: MSMg01no277_b22.b1 PHD_FILE: MSMg01no277_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:12 2005CHROMAT_FILE: MSMg01no277_b22.g1 PHD_FILE: MSMg01no277_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATC
TTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTT
CTGCATCTAACGCCATGATCATGTGGCTTTTGTCTTTGAATTTGTTTATA
TAATGGATTACATTGATGAATTTTCGTATATTAAACCATCCCTGCATCCC
TGTAATAAAACCTACTTGTTCAGGATGGATGATTTCTTTAATGTGATCTT
GGATTCTGCTAGCGAGAATTTTATTATAGATTTTTGCATCAATATTCATA
AGATAAATTGTTTTGTAAAACTCTATCCTTGTTGAGATCTTACCCGCGGT
TTTCTTCTTCCCCCANACGGCCCCATATTATGAGTAGTTCTACAAATCTT
TCCACCTCCATCTAGAAAAAAAAAAAACAACGCCGTGGGGGCAAATCCTA
CTTTTTTTCACTGATATTGCCTCATGCCTCACACCAATGTGTTCCCTGCA
TTTTCCCGTGATTTTATTAACTATACTTTTGTTTGTTCCCCACATTCTTA
GTCTCTCATGCATGACTTCCCTCTTCCCTTCCTTATAATCCTCGTCTACC
CTTACTTTTACTACTTCATTATATCTCTTATCCCGTTTCCCTCTCCTCTA
TTAAACACCCGGCAATCCTATATTCCTTCTCCCTTCTCTCCCTTCATATT
ACCCGTACTCATATCCCACCTTTCTACATTATATTTTCCTTTCTCATTCC
TTCATCCCTTTTTTTCCCCTCCTTTCTACAGTTTATTATCAATA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATGTTCTTTCATGGTGTTTCTATGAA
GGCCCTATGATGTTTCTATTTGGCAAGTGATCCAGTTTTGAATTTTTTTT
TTAAACCTAAAGTCCAGGTTTATTGGTCGAGAGAGATTTTAATTTTATCT
TATCTGTTGTTACGTGTGCAGGCATGCCAATGCTGGGCAGTACACACGTG
GCGGTCAGAAGAGTGCTAATGCAGGTCAGTTCCCTCCTTCCACCATGAGG
TCAGGGGCTTGGGAGGTCAAGTGTCACATATAAGCACTTCAACATACCCT
GGAGCAAGGAGGAAAGTGTATTGGGAGTGACTTCAAGTATGAATTTAGAG
CTGTGACACGACTTCATCATATAAGATCTGAAGCAGGCAGACAGAACTTT
AAACACCATTGTTTACCAGCCTGCGAAAGCAGGTAGTTACTGATACCCAG
CTGTGAGGTGCTACTTAAACGCATTTAGGTGGGGGGCACAGACAGCTATT
ACAATATGGCTGCAAGAGGCTGGGGAAATGGCTTAGCCAGTAAATTACTT
GCCAAGGAAGCATGAGAGTCTGAGTTAGAGACCTCCATAACCTAGCCTAA
CTGTCCTGCTTCTGGACATTGATAGAGCGTGACAAAGCAACAGCAGCCAC
AGCAGTAGCAGCAGCAACAGCAACTACTACAACAACTACAACAATAACAA
CATCTACAACAAACCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_b22.g1 MSMg01no277_b22.g1 CHROMAT_FILE:
MSMg01no277_b22.g1 PHD_FILE: MSMg01no277_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:12 2005
         (642 letters)



>mm_chr14_78788187_78789227
          Length = 1041

 Score = 1089 bits (563), Expect = 0.0
 Identities = 623/643 (96%), Gaps = 2/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgttctttcatggtgtttctatgaaggccctatgatgtttctatttggcaagtgatcc 60
           |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 921 aatgttctttcatggtttttctatgaagtccctatgatgtttctatttggtaagtgatcc 862

                                                                       
Query: 61  agttttgaa-ttttttttttaaacctaaagtccaggtttattggtcgagagagattttaa 119
           ||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct: 861 agttttgaatttttttttttaaacttgaagtccaggtttattggttgagagagattttaa 802

                                                                       
Query: 120 ttttatcttatctgttgttacgtgtgcaggcatgccaatgctgggcagtacacacgtggc 179
           |||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||| 
Sbjct: 801 ttttatcttatctgttgttaagtgtgcaggcgtgccaatgctgtgcagtacacatgtggt 742

                                                                       
Query: 180 ggtcagaagagtgctaatgcaggtcagttccctccttccaccatgaggtcaggggcttgg 239
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcagaagagtgctaattcaggtcagttccctccttccaccatgaggtcaggggcttgg 682

                                                                       
Query: 240 gaggtcaagtgtcacatataagcacttcaacataccctggagcaaggaggaaagtgtatt 299
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 gaggtcaagtgtcacatacaagcacttcaacataccctggagcaaggagtaaagtgtatt 622

                                                                       
Query: 300 gggagtgacttcaagtatgaatttagagctgtgacacgacttcatcatataagatctgaa 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgagtgacttcaagtatgaatttagagctgtgacacgacttcatcatataagatctgaa 562

                                                                       
Query: 360 gcaggcagacagaactttaaacaccattgtttaccagcctgcgaaagcaggtagttactg 419
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 gcaggcagacagaactttaaacaccattgtttaccagcctgcaaaagcaggtagttactg 502

                                                                       
Query: 420 atacccagctgtgaggtgctacttaaacgcatttaggtggggggcacagacagctattac 479
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 atacccagctgtgaggtgctacttaaacgcatttaggt-gggggcacagacagctattac 443

                                                                       
Query: 480 aatatggctgcaagaggctggggaaatggcttagccagtaaattacttgccaaggaagca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatatggctgcaagaggctggggaaatggcttagccagtaaattacttgccaaggaagca 383

                                                                       
Query: 540 tgagagtctgagttagagacctccataacctagcctaactgtcctgcttctggacattga 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 382 tgagagtctgagttagagacctccataacctagcctaactgtcctgcttctggatattga 323

                                                      
Query: 600 tagagcgtgacaaagcaacagcagccacagcagtagcagcagc 642
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagagcgtgacaaagcaacagcagccacagcagtagcagcagc 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space:   651592
Effective search space used:   651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)