BAC Information

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BAC

Clone NameMSMg01-279F21
Chromosome14 (Build37)
Map Location 116,625,835 - 116,767,929
singlet/doubletdoublet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279F21.T7 (MSMg01no279_f21.b1)MSMg01-279F21.TJ (MSMg01no279_f21.g1)
ACCAG416750AG416751
length745731
length of high quality
(start - end)
318 (36 - 353)247 (58 - 304)
definitionCHROMAT_FILE: MSMg01no279_f21.b1 PHD_FILE: MSMg01no279_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005CHROMAT_FILE: MSMg01no279_f21.g1 PHD_FILE: MSMg01no279_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,625,835 - 116,626,152)(116,767,689 - 116,767,929)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAA
AGATACCAAAGTGTCTGTCATAGAACTGGTCATTCCTACAAATGATGCCA
GTTTCTTGGTTAACACTCAGAATTCTTGTCTTCCCACTCAAAGGCTTACA
AGTCCCAAAAGAGTGAGCTTATCTTTGAAATGACTGTAAGGTTACTAAGA
AATGTACACACACACACACACACACACACACACACAGGGTGGAGGGAGGC
CACACAAGGTGCTGTGATAGTTCAGCATATCATAAAGTGTGTGTTGGGTT
TGTACTAGGGAAATACAGTGTAAGTTTTCCTCTGAATATATATTTTTAAT
TTATAGTTTGTCAGCCACCTATCATTAGTATAACTCTATTATCAAAACTC
AGATAAACACTATAGTCAAACAAAACAGTCCTTGAAAATCCTCTGTATGC
ATGATTATTAATGAGATTTAAGGTTTTCTAATTTAAATTGTCCTCAGAGG
AAAAAGATGAGTATAGAAGTCCAAATGAGTGTAGCTGTGATGGTTATCAG
GACTTCTGAAGTCTTATGACAGACACGAGGCCTTCATTGTTTGGTTTTCA
TTTCCCTCCCTGTATAGTGACATAAAGTGTCCTGAAACTCAGAATACCAA
CTCTGCACATTTCCTATTTAATGAGTCACAAACCTCTCTGTTAGGCTCTT
ACTCCCCACAATTATAACAAAGAGGGGATACAAGCTTTCTACTTT
TGGCGGCCGCCTGGTTTCGAAGTAGGGGTGAACTATAGAAGGTTCCCAGA
AAATCCTACATAGAAAGTGCCGAATGGATAATATAAAATAACTTCAATTC
ATTTTCCCAAGTGGAATGGCTTAAAACTATGCAGATCTGTATGCTTATAG
ATAAAGTTCAGGCATTATAAGTACACTTAGAAGTCTATTATGGTCTACCA
AGAAAACATTTCATGAGGTAGCCCTAATGGACTTATTCTTTATAAGTATT
ACAAAAAGTGGCTATAACCAATAAGATCTCAACTGGTGTAATCTTCATAG
TGTTTATGNTTTGCAAAAAATAGCAAAGATCTCTCCCTTTGACTTTTATT
TTACCCCCACCCCCCCAGTACCAAGCTCAGGTGGTCTTTACTAAATACAT
GTACAATGAGCAAAGCGAAATATATCCGTATATGTGTACACATGCATATA
TATTTATATGTACAGATGTACAGACATAAGCATACACACATATATAATTT
GTATAGAATTTATTTCTTTAAAAATATATACACTATTTCTTAAAATTTTG
TTTATATTATATATGTGTATAATTTTATATATGAATATATATAAATAATT
TGTGTAGCAATTGTAATTAAAGAAGGGAAAACGCTTCCAGATTTCTTGTA
TCCTAATGGAAATGCAAAGGCTTTCTGCCTTCCTGGACTGAAGGTTAGCT
TTTTTCTTTCTTGGTATGCTGATACCTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_f21.b1 MSMg01no279_f21.b1 CHROMAT_FILE:
MSMg01no279_f21.b1 PHD_FILE: MSMg01no279_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:56 2005
         (318 letters)



>mm_chr14_116625641_116626358
          Length = 718

 Score =  526 bits (272), Expect = e-154
 Identities = 303/320 (94%), Gaps = 13/320 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaaaag---ataccaaagtgtctgtcatagaactggtcattcctacaaatga 60
           ||||||||||||||   ||  ||||| |||||||||||||||||||||||||||||||||
Sbjct: 195 ggaattcttaaaagacaat--caaagggtctgtcatagaactggtcattcctacaaatga 252

                                                                       
Query: 61  tgccagtttcttggttaacactcagaattcttgtcttcccactcaaaggcttacaagtcc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgccagtttcttggttaaaactcagaattcttgtcttcccactcaaaggcttacaagtcc 312

                                                                       
Query: 121 caaaagagtgagcttatctttgaaatgactgtaaggttactaagaaatgtacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaaagagtgagcttatctttgaaatgactgtaaggttactaagaaatgtacacacacac 372

                                                                       
Query: 181 acacacacacacacacacaca--------gggtggagggaggccacacaaggtgctgtga 232
           |||||||||||||||||||||        |||||||||||||||||||||||||||||||
Sbjct: 373 acacacacacacacacacacacacacacagggtggagggaggccacacaaggtgctgtga 432

                                                                       
Query: 233 tagttcagcatatcataaagtgtgtgttgggtttgtactagggaaatacagtgtaagttt 292
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tagttcagcatggcataaagtgtgtgttgggtttgtactagggaaatacagtgtaagttt 492

                               
Query: 293 tcctctgaatatatattttt 312
           ||||||||||||||||||||
Sbjct: 493 tcctctgaatatatattttt 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no279_f21.g1 MSMg01no279_f21.g1 CHROMAT_FILE:
MSMg01no279_f21.g1 PHD_FILE: MSMg01no279_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:56 2005
         (247 letters)



>mm_chr14_116767485_116768131
          Length = 647

 Score =  435 bits (225), Expect = e-126
 Identities = 237/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   agaaagtgccgaatggataatataaaataacttcaattcattttcccaagtggaatggct 64
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 445 agaaagtgccgaatggataatataaaataacttcaattcattttatcaagtggaatggct 386

                                                                       
Query: 65  taaaactatgcagatctgtatgcttatagataaagttcaggcattataagtacacttaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaactatgcagatctgtatgcttatagataaagttcaggcattataagtacacttaga 326

                                                                       
Query: 125 agtctattatggtctaccaagaaaacatttcatgaggtagccctaatggacttattcttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 325 agtctattatggtctaccaagaaaacatttcatgaggtagccctaatggacttattcagt 266

                                                                       
Query: 185 ataagtattacaaaaagtggctataaccaataagatctcaactggtgtaatcttcatagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagtattacaaaaagtggctataaccaataagatctcaactggtgtaatcttcatagt 206

            
Query: 245 g 245
           |
Sbjct: 205 g 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)