BAC Information

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BAC

Clone NameMSMg01-279L23
Chromosome14 (Build37)
Map Location 108,236,656 - 108,236,948
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279L23.T7 (MSMg01no279_l23.b1)MSMg01-279L23.TJ (MSMg01no279_l23.g1)
ACCAG417022AG417023
length743761
length of high quality
(start - end)
678 (44 - 721)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no279_l23.b1 PHD_FILE: MSMg01no279_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:25 2005CHROMAT_FILE: MSMg01no279_l23.g1 PHD_FILE: MSMg01no279_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTACAAAGTATTTAAGGTTTTTTTCCCTTAATTTCTTCATTGATGC
AGTGGTCATTGATTATAGATTTGTTTATTTTCTATGAGATTGTAGGCTTT
ACTTTGTTTCTGTTGTTGATGTCCAGTTTAATCTAATTTGATATGATAAG
ATGCAAGGGTTTAGCTCAATCTTGTATCTGTGAGGCTTTGTATATGAAAC
TACATGGGGAATTTTAGAGAAGATTATCTGAGGTGCTGAGATTAATTCCT
TTGTGTTTGGGTACCTTGTTTCATAGATATTTGGTAAGTCCATTATGATA
ATAATATCCATTTTATTATTTCTCTATTTATTTTTTCTCTCTCTAGTTAC
TGTCCATTGGCAAAAGTGGAGTTTTGAATTCCCCTACTATTATTACTGGT
GTGTAATTTAAGTTTTAGCAATGTTTCTTTTATGAATGCTTGTGCCCTTG
CATTTGGGGCATAGATATTCATAATTGAGTGGTCAGGTTGGTGTATATAA
AGTGTCCCTGCCCAACTCTTTTGGTTATTTTTGGTTAAAAGTATATTTTA
TTACTGTATATATTACTATATATTAGAATAGCTAATTCAGCTTGTTTCTT
GGATCTGTTTATGAGGAAAACACTTTTTCTAGTCCTTTCCTCTGACATAG
TATCTATCTTTGTTGCTGTGGTGTGTATATTTTATACAGCAGA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGAAATTCATTGCCTTTTTTCTTCTTGCACTATGA
CTAAAGTCATGTGATTAGAACAATATTTTCCCTTGACTTACAATTGGTTG
CCAATACATCTCTGACACAGAATCCCCAGGAGAATGCGCACACAATGGTT
GTACAAGCTTAGATCATTTCTTTGCTTTACTTAGTATGCCTCTGCTTCCT
TTCTCTCTTCCAGCAATTATGGAAAGTTTCCTTTTCAGCTTTTATTTGCA
TTATTGAAATGATATATAAGTATCTTATTTATTTTCCAGCCAAGGAGAAT
GGTAGCTAGCTATTATTTTGTGCACCCCCGCCCGTGGAGGATTGGGGTGG
GGTAGGGGGACGGNTAAGCCNCAATACAAAAAAAAAAATTAGAGAAGGTG
AGTTGTCTCCTTCCATGTGGATGGTAGAGTTCAGGATATCTGAGAATGAC
CTTTATTCAGAGAGCCATATTCATATGCTATACACCTTATTATCGAACAA
TTAATTTCTCGAATACTCTTGACTATATATTATAATCTTTCTTTCATATT
TCTTTTACTCCTGTACTATTTTTGCATTGTGTATAATATCTTCGAATTAG
GTAACCCTACTGTCTTATTCTTTTTTTTCGTATTTTTAGTAATAACATTT
ATTCTTCACTTCGATAAACGTTCTTCACCCTATTCTTCCTCCATCCCTTG
TATCAATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_l23.g1 MSMg01no279_l23.g1 CHROMAT_FILE:
MSMg01no279_l23.g1 PHD_FILE: MSMg01no279_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:25 2005
         (293 letters)



>mm_chr14_108236456_108237148
          Length = 693

 Score =  559 bits (289), Expect = e-164
 Identities = 292/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cattgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccc 434

                                                                       
Query: 61  ttgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcaca 374

                                                                       
Query: 121 caatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttccttt 314

                                                                       
Query: 181 ctctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatga 254

                                                                
Query: 241 tatataagtatcttatttattttccagccaaggagaatggtagctagctatta 293
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tatataagtatcatatttattttccagccaaggagaatggtagctagctatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)