BAC Information

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BAC

Clone NameMSMg01-279P17
Chromosome14 (Build37)
Map Location 110,063,478 - 110,063,788
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1, LOC640892
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279P17.T7 (MSMg01no279_p17.b1)MSMg01-279P17.TJ (MSMg01no279_p17.g1)
ACCAG417191AG417192
length767775
length of high quality
(start - end)		317 (45 - 361)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no279_p17.b1 PHD_FILE: MSMg01no279_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:43 2005CHROMAT_FILE: MSMg01no279_p17.g1 PHD_FILE: MSMg01no279_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATATGTTATCTTTCTATATGCAAGGCAGGAGTCCCTGGCCCTGAG
GAAGGAGACCCAGCATACACTCACAATGAAGTAGTCCTTTCATCCCTCCC
AAATGCTTCTACATTGACATAAAGTAATGGAGGGTGTTGGAGAGTAGAGA
GAGGTTTTCATATTCCCTCTTTCCTCCTCCGTTACAAGAGCTTGACTGAA
CTGCTGTCCAAAGGCCTCCACTTAGCTCTTCATATAAGGAGGTCTCAGGA
TGAAGTCACTCAATCAGACACTTATGGTGCATTCTCAGAGGTAGAGCAGA
GCCTTGACTATTTTTTTTTTTACCCACCGCCCCGCCCAGATTTGGGGCCT
AAAGTACTGTGGGGAACACGATTTCATTCTTAAATAATGGATAATAAGGA
CTATAACTATGAATTACATTTTACAAAGAGTAAAACATTGTCAATATTCT
GACCAGGGACAAATACTCTTTATTGAACACTATACATAATAAAATGGAAA
CAATTTAACATATCATCTTACTAAATCTGGAGGTTACTAACGACATTTTC
ATCATACCTAAGACCATTCCTTATTCCTTGTATTATTGCATGATATATTA
GGAGCTTATGAAAAACCTCCCAGGTTGCCATTTAATGGAACTTACTGGTC
CTATTTTAAGTTTTTTATGTATACACTTAGAGTTTAATTCTTATATATTA
ATTAATCATATATTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAACCAATAGC
TGAGAAGTACCTGAATACATGTTCAGCATTCTTAATCATCAGGGAAATGC
AAATCAAAGCAACCCAGACATTCCACTTCACACCAGTCAGAATGGCTAAG
ATAAAAACTCAGGTGATAGCAGATGCTAGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
AGCAGTCTGGTGGTTCCTCAGAAATTTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCCTGGTCATATATCTGCGCCGAGCCATGCCTTGAGCA
ATCGCCATTATAAGATGGCGCTGGCCTCCGCTGTGCCTAACTAGTAAACA
AGCCTTGTATGCAGGTGCGAGAGTGATCTCACGCCTAGTCACTGCCCACC
TCAGGGCATAGTAATGGGGTGATGGGTGAGCAACGAATCAGGAGCTGTCA
CACCACATCAGGTGCTGAAATGTCAAGCTGCGGTCTATATAAGCAGCACC
ATTTTTTTTGGTTTCAGGGTCCTTCCTCCTGATAAGTAAGAAATAATAAG
CTTTTTTGCAGCATATGATTCTTATTTGTTCTTGAGTGTTGTTCTTTGTC
TGTTTGTTTATAACAAACTCCGAATTATATGACGCTCGAATAACTCAATG
CTATAACAATTCCATTACCTTCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_p17.b1 MSMg01no279_p17.b1 CHROMAT_FILE:
MSMg01no279_p17.b1 PHD_FILE: MSMg01no279_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:43 2005
         (317 letters)



>mm_chr14_110063274_110063989
          Length = 716

 Score =  503 bits (260), Expect = e-147
 Identities = 299/312 (95%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgttatctttctatatgcaaggcaggagtccctggccctgaggaaggaga 64
           ||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 205 gaattccatatggcatttttctatatgcaaggcaggagtccctggcccggaggaaggagg 264

                                                                       
Query: 65  cccagcatacactcacaatgaagtagtcctttcatccctcccaaatgcttctacattgac 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccagcatacactca-aatgaagtagtcctttcatccctcccaaatgcttctacattgac 323

                                                                       
Query: 125 ataaagtaatggagggtgttggagagtagagagaggttttcatattccctctttcctcct 184
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 ataaagtaatggagtgtgttggagagtagagagaggtttttatattccctctttcctcct 383

                                                                       
Query: 185 ccgttacaagagcttgactgaactgctgtccaaaggcctccacttagctcttcatataag 244
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccattacgagagcttgactgaactgctgtccaaaggcctccacttagctcttcatataag 443

                                                                       
Query: 245 gaggtctcaggatgaagtcactcaatcagacacttatggtgcattctcagaggtagagca 304
           |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||
Sbjct: 444 gaggtctcaggatgaagtcactcaatcagacacagatggggcattctcagaggtagagca 503

                       
Query: 305 gagccttgacta 316
           ||||||||||||
Sbjct: 504 gagccttgacta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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