Query= MSMg01no280_f17.b1 MSMg01no280_f17.b1 CHROMAT_FILE:
MSMg01no280_f17.b1 PHD_FILE: MSMg01no280_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:10 2005
(681 letters)
>mm_chr14_34540771_34541851
Length = 1081
Score = 1058 bits (547), Expect = 0.0
Identities = 646/687 (94%), Gaps = 14/687 (2%)
Strand = Plus / Plus
Query: 4 ggaattcatggaagtaccgaaaggagaaggaagaaaagaactcatttctggtttttcacc 63
|||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 192 ggaattcatggaaggaaggaaaggagaaggaagaaaagaactcaattctggtttttcacc 251
Query: 64 aatagcgtaatggaccccaagggattttccttaagtcaagttgatgcagaagattaaaca 123
|||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 252 aatagcgtaatggagccaaagggattttctttaagtcaagttgatgcagaagagtaaaca 311
Query: 124 tttccattggtctctccagcatatggactgcctcagtgcctcagctgccctctggaatgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttccattggtctctccagcatatggactgcctcagtgcctcagctgccctctggaatgt 371
Query: 184 gtgggtgctggttgacagaaaagttcaggcagtggctacacaccaccgctagtcaccatg 243
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgggtgctggttgacagataagtttaggcagtggctacacaccaccgctagtcaccatg 431
Query: 244 tcagtgccatgtgacagatacaattttgtggtcacctttctgaaaataaaa--------- 294
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct: 432 tcagtgccatgtgacatatacaattttgtggtcacctttcagaaaaaaaaaaagaaagaa 491
Query: 295 ----cctagagacccagacatttgatgtacatcttgctaaggtcctgaggtctgcagtca 350
||||| |||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct: 492 aaaccctagggacccagaaatttgaagtacatcttgctaaggtcctgaggtctgcagtta 551
Query: 351 aaatgtggagactcaaacctcaccgcctctgacctaaccctatgacatctgacacctgaa 410
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaatgtggagactcaaacctcagtgcctctgacctaaccctatgacatctgacacctgaa 611
Query: 411 tcctcttgacgtcaagggaggtgaagatctgaggaaggagcggtggccctgattgcccaa 470
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tcttcttgacgtcaagggaggtgaagatctgaggaaggagcggtggccctgattgcccaa 671
Query: 471 gaaacataccagacagtcaggacctgtgaggtgactctcagggtaaacctgcccctcatc 530
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 672 gaaacatatcagacagtcaggacctctgaggtgactctcagggtaaacctgcccctcatc 731
Query: 531 aggtaccaaagttaagatcggagacgttgattgaggaaacaactcttagaagagaaagtt 590
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 732 aggt-ccaaagttaagatcggagacgttgattgaggaaacaactcttagaagagaaagct 790
Query: 591 tgcctatccaggaaggtctggaacatggcggagctgtccagaaacacagagcaacacaga 650
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct: 791 tgcctatccaggaaggtctggaacatggcggagctctccagaaccacagagcagcacaga 850
Query: 651 cccctggttcctaaggtgggtggagtt 677
|| ||||||||||||||||||||||||
Sbjct: 851 cctctggttcctaaggtgggtggagtt 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_f17.g1 MSMg01no280_f17.g1 CHROMAT_FILE:
MSMg01no280_f17.g1 PHD_FILE: MSMg01no280_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:10 2005
(285 letters)
>mm_chr14_34700038_34700720
Length = 683
Score = 464 bits (240), Expect = e-135
Identities = 271/282 (96%), Gaps = 2/282 (0%)
Strand = Plus / Minus
Query: 1 tggaaattcctaccccatgcatgatgacgatgtgtctcctgcaccaagctgcagcaagca 60
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 480 tggaaattcctaccccatgcatgatgacgacgtgtctcctgcaggaagctgcagcaagca 421
Query: 61 ctctgtataagggagagttaaaataggaggttagccctggtactctctctctctctctaa 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 420 ctctgtataagggagagttaaaataggaggttagccctggta--ctctctctctctctaa 363
Query: 121 gctcccctccatgtcttctttgatgacttctctgtctcttccgcagtgcatcgtggtcag 180
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 362 gctcccctccatgtcttctttgatgacttctctgtctcttatgcagcacatcgtggtcag 303
Query: 181 gactggacagggccgcctgagtggcaggcagactgtgccagggctctagttcaggtttcc 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gactgggtagggccgcctgagtggcaggcagactgtgccagggctctagttcaggtttcc 243
Query: 241 ctcatcaccacattctgcagaagtgatctttcccagcagtcc 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcatcaccacattctgcagaagtgatctttcccagcagtcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space: 186024
Effective search space used: 186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
