BAC Information

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BAC

Clone NameMSMg01-288H04
Chromosome14 (Build37)
Map Location 82,164,867 - 82,165,171
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288H04.T7 (MSMg01no288_h04.b1)MSMg01-288H04.TJ (MSMg01no288_h04.g1)
ACCAG418272AG418273
length764838
length of high quality
(start - end)
324 (44 - 367)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no288_h04.b1 PHD_FILE: MSMg01no288_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:32 2005CHROMAT_FILE: MSMg01no288_h04.g1 PHD_FILE: MSMg01no288_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGGGAATATCACAAAATCCAGGATAGCAAAAACTATTCTCAACAA
TAAAAGGACTTTCAGAGAATCAACACCCCTGACCTCAAACTGTATTACAG
AGAAATAGTGATAAAATTTCATGGTATTGGTACAGAGACAGGCAGGCAGA
CCAATGGAACAGAATTGAACCAGAAATGAACCTACATACTTATGGTCACT
TGATGTTTGACAAAGAAACTAAACAATATAGTAGAAAAAAGACAGCATTT
TCAACAAATGGTGCTGGTTCAACTGGAAGTCACCATGTGGAAAAATGCAA
ATTGATCCATTCTTATTNCTGNGTACACCCCTCACCCGCCGAGTATATCA
AGGGCCTCCACATAAAACCATATACACTGAAACTAACAGAAGAGAAAGTG
AGGAAGAGCCTCAAACACATGGGCACAGGGGAAATTTTCCTGAACATAAC
ACCAATGGCTTATTCTCTAAGATCCACAATAGATAAATGGGACATCATAA
AATTCAAAGATTCTGTGTGGCAAAGACTACTGTCAATAGGCCAAAATGGC
AACCAACAGATTGTGAAGAGATCTTTACCAACCCTACATCTGATAGAGTG
CTAGTATTCAATATACATAAGGAACTCAAGAAGTTTAACTCCAGAGAACC
AAATAACCCTATTATAATGTGGTACAGAGCTAAACAAAAGAATTCTCAAC
TTAGGAATACAAAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGTGCCAGAGAATCACAACTAGTCTCTC
TGTTATCAGAGAAAAAACCACTCTCCTAGAACAGCTGCAAGGAAATGAAT
TCTATCAACAACTAGAATGAACTCCGGAACACCTTCCTTGTACAACTTCC
AAATCTATTTCAGCCAGCTAATCCTTAAAGGCTGCTCCAGATATGCTGTG
CCTAGAAGGAAAACTCCAGAAATACAACATTTAAAAATGTAGTGTGTGGT
TATATATTTATTTGTATGTATGTATACATATATATATATATGTATGTATG
TATATATGTGAGTGTTTTTTTTTCCCCCCCCCCCCCCCCCCNNNNTTNTT
TTTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCTAAAAAAAAAAAAAAATC
TGTGGGGGGTGGGGGCGCTTTCTCTCTTCATTTACTTTCTCTCCTTGTTC
CTTACATATCATTTCTTTCCACCTCTCTTCTTTTCGAACTCTTATTCTTC
ATCTCTTCCCTTTTCCTTTCTTTTTTTTCTATTCCTATTTGTCCCATTTT
TTCTTTTTTTTCCTTACTTCTTCTTTTTTCCTCTCCATCTCTTTTAAACC
CTCTCTAAATTCCTGCAACTCTCACGTTTTCCCGGTCTGTCATACCGCTA
TTTCCCCCTACTACCTTATATCGTCTTTGCTATACTATCGCACCCTTATC
TTAATTACATATGCCGTTCTTAACACAATCATCCTTATAGGACATATTAC
GTCTCATCCCCCCCTCCCTTCTTTTCCCATCTATCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_h04.g1 MSMg01no288_h04.g1 CHROMAT_FILE:
MSMg01no288_h04.g1 PHD_FILE: MSMg01no288_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:32 2005
         (294 letters)



>mm_chr14_82164666_82165359
          Length = 694

 Score =  499 bits (258), Expect = e-146
 Identities = 289/306 (94%), Gaps = 13/306 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgccagagaatcacaactagtctctctgttatcagagaaaaaaccactctcctaga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 catgtgccagagaatcacaactagtctctctgttatcagagaaaaa-ccactctcctaga 260

                                                                       
Query: 61  acagctgcaaggaaatgaattctatcaacaactagaatgaactccggaacaccttccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagctgcaaggaaatgaattctatcaacaactagaatgaactccggaacaccttccttg 320

                                                                       
Query: 121 tacaacttccaaatctatttcagccagctaatccttaaaggctgctccagatatgctgtg 180
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 321 tacaacttccaaatctatttcagtcagctaatccttaaagggtgctccagatatgctgtg 380

                                                                       
Query: 181 cctagaaggaaaactccagaaatacaacatttaaaaatgtagtgtgtggttatatattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctagaaggaaaactccagaaatacaacatttaaaaatgtagtgtgtggttatatattta 440

                                                                       
Query: 241 tttgtatgtatgtatacat--at----------atatatatatgtatgtatgtatatatg 288
           |||||||||||||||  ||  ||          |||||||||||||||||||||||||||
Sbjct: 441 tttgtatgtatgtatgtatgtatgtatgtatgtatatatatatgtatgtatgtatatatg 500

                 
Query: 289 tgagtg 294
           ||||||
Sbjct: 501 tgagtg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)