BAC Information

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BAC

Clone NameMSMg01-288M13
Chromosome14 (Build37)
Map Location 64,968,221 - 64,968,381
singlet/doubletsinglet
Overlap geneMsra
Upstream geneBlk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288M13.T7 (MSMg01no288_m13.b1)MSMg01-288M13.TJ (MSMg01no288_m13.g1)
ACCAG418515AG418516
length832753
length of high quality
(start - end)
165 (42 - 206)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no288_m13.b1 PHD_FILE: MSMg01no288_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:56 2005CHROMAT_FILE: MSMg01no288_m13.g1 PHD_FILE: MSMg01no288_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTGGTTGTTCAGTTAGGCTCATTTGAAAAATGAAAGAACAAGTCAGTT
CCCAAGCACAGCCAGAGTCTGTGTTTTACCACCGACAAAACAAAAGCAAT
TTGAAGTCTTACTAGGATTTTGTTTATTGTATGAGATTGGTGGTGGTGGT
GGTGGTGNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNCNNNNNNNNNNN
TTNNNNNNNTNTNTNNTTTCTTTTTTTTCTNCCCCCCNNCTCCCCCCNCC
CCCCCCCCCCCTTCTTTTTTTTTTTTTCNCCCCCCCCCCCCCCCCCCCTT
TTCNNTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNTNTN
NNTTTTTNTTTTTTTTTCCCCCCCCCTTTTAAAAAAAAAAAAAAAAAATT
TGTGGTGGGCGGGGATCACACACTCAATAATATTCTTTTTTTTTTCCACC
ACTAACCCTTTTCCTCGCCTTTTTCACCTTTCTTCTCACTCCCCTCTTTC
CTATTCCCTCCCTTTTTCCTTTCCTCCCATCCTTCCTCCATTTTTTTCCT
TTTTTTTTATTTCCTCGACTTAATAATAANAACTTTTTTTCCCCCTCCCT
TCTTTTGTTTTTTTCTTCCCCCATTCCCTCTTTTTACTATATTTTGCCCC
CCCCATCTATTCCCCACCCTTTTTTTTTCCCTTTCTCTCCCTCGCCGCCT
TTTCCTCTTTTTTACTTCTTTTTTTACCCCCCCAATCCTTGCTTGTCCTT
TTTTATCCTTTTTCCTTTTCTCAACACCCTCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTAGTCGCGAGCGAGTGGCTAAGG
TAAGCGGTGTTATCTCAAAGACCCTTGTTTTGAAGGAACAGAACCCATTT
GTTTTAGTCTGCTTTGTGCTGCTATAGCAGGGACCATCTGAGACTAAGCG
ATTCATAAAGAGCACAGATTTATTTATCATAGCTCTAAAGACAAAGTCCA
AGATCAAAGGGCCTGCATCTGGTTAAGTATCTTAACCATCCCATGGTTGC
TACAGCATCCATGGCGGAAAGCATAGGGTGCGTGTAAAAGAGATGGAAGG
GGCCCACTTACTTGTTTTTTACCACCCCCGCCGACAGCAACACTCATCCA
TCAGTGAAGGCAGGGCCCCCACTCCCTAATCGCTTGTTAGGAGTCTCATG
ACCCAACACTGGGAATTGAGTTTCCAATTTGTAAACCACATTGAGAAGCA
ACATCATTTGGGTTGACTTAAGAGGAGAAGAGAGCCATGTGGTGGTGGTG
CACTTCTTTAATTCCAGCACTTGGGAGGCAGAGGTAGGTGAATTTCTGAG
TTTGAGGCCAGCCTGGTCTACAAAGTGAGTCCCAGGACAGCCAGGGCTAT
ACAGAGAAACACTGTATCGAAAAAAAACCAAACCAAACAAACAAACAAAC
AAACAAAAAACAGGAGAAGAGAAAGTCACCGGAACGGCTAGATGTCTCTT
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_m13.b1 MSMg01no288_m13.b1 CHROMAT_FILE:
MSMg01no288_m13.b1 PHD_FILE: MSMg01no288_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:56 2005
         (165 letters)



>mm_chr14_64968017_64968581
          Length = 565

 Score =  296 bits (153), Expect = 5e-85
 Identities = 159/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggttgttcagttaggctcatttgaaaaatgaaagaacaagtcagttcccaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggttggtcagttaggctcatttgaaaaatgaaagaacaagtcagttcccaa 264

                                                                       
Query: 65  gcacagccagagtctgtgttttaccaccgacaaaacaaaagcaatttgaagtcttactag 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcacagccagagtctgcgttttaccaccgacaaaacaaaagcaatttgaagtcttactag 324

                                                    
Query: 125 gattttgtttattgtatgagattggtggtggtggtggtggt 165
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattttgtttattgtatgagattggtggtggtggtggtggt 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)