BAC Information

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BAC

Clone NameMSMg01-289K10
Chromosome14 (Build37)
Map Location 104,711,544 - 104,711,741
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289K10.T7 (MSMg01no289_k10.b1)MSMg01-289K10.TJ (MSMg01no289_k10.g1)
ACCAG419145AG419146
length738743
length of high quality
(start - end)
39 (588 - 626)199 (486 - 684)
definitionCHROMAT_FILE: MSMg01no289_k10.b1 PHD_FILE: MSMg01no289_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:00 2005CHROMAT_FILE: MSMg01no289_k10.g1 PHD_FILE: MSMg01no289_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGGCCTCTCCCCTTCAGGTTGTAGTATCAGTAGACCTACATTTTCTCTG
CCATTGTCACCGATCTCCCGCCAAAATGCTGTGCTCCCTCTCCTTGGCTT
AGCTGTCCATGTCTTTGACCCTTTGATTTGCTCAGAATAACTCCCGCTTA
GCATGGCATCCTTCTTCTGGCTGGACCATGTTTCTTTGACCCCCTTTGAC
ATCTGTCAATTTTCCATAATGACATTTATTACTAAATTCATCTTTGCACT
TTTGCTCATATAATGTTTGTCTTCCTGACCAGCCTATAAGATTCATCATA
GGGTGTATATTTAATCCCCCCCCCCCCGATACATACGTGAAGCTCCCAAA
AATGAACCACCCCCCACATGTAAAATTATAAAAATGATGATGCTTATGAA
GAATTGTCCATCTTGATATTTTCTTTCCTTCATTATAAAAAGTCTATTCC
CCTCCTCGCCGGCTGTCATATTTTCCTACACAGATCTCACTTGTTTCACC
TACACTTTAAGATCTCTACTACTAGGTGGCTTGTGTACAACCATTCTTTC
CTCTTGCACGCTTTCTCACGACCGGGCACTAAGAACCAACAAACCAGAAT
CTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGGGCAAGCGTGCAAT
CCCCAAGCCCCGAGCCCGCTGCTTACATCTTTAGGAGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTAGGTCAAGGTAACATGCACACAG
CGTGACACAGCAGTATCTGGCCGCATTAGTGCAGACCCCAGGATATTTCA
TATTTGATGTTATTTCCTTCCTACTAAAGCATCATGCTGTTTTCAGACAG
CGGGTAAAGTAACTGTAAGATGTATGTGGTAACGGAAGGGTAGCACTAGT
GGTGGTGGTGCAGAAAGTCACGCAGGGAACAAACTGTACAGGGTATGCAT
CACTGACATGTCTTCATCCCTCAGCACCAATGACAGGCTCAGTCCCAGCA
TCTGCTAGTTGTGTTCATAGAGCGCTCCTTAATAAATACTGGTGGTAAAA
GTGAACACTTCTCTGCCGCCTAACTTCTCCAACTCAATATCCCACTCCCT
TGCTTCATGGCTGCTGCTGCTTCAATGCACACACCACTTCTCTCGAGGGA
GATGAAAAGAATTTCTGTGAGATGATTTCCTGAAGTATACAGTCTCCACT
CTTCTCTAGTCATTGACTGATCCAAACAATCCTATGAGTGATCACCTGTC
TCCTCTACCTCTCGTAGACTTGAGTAAAATTATTGCCTAGATGTTTTGTT
CTACTGTTCCAACTTCAAGTTCTGTTTTGAAGGTAAAATGTCAAGACCAG
CGTTTTCCAAGGAGGTAGGTCTCTTTCTCCAAATAAATAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_k10.g1 MSMg01no289_k10.g1 CHROMAT_FILE:
MSMg01no289_k10.g1 PHD_FILE: MSMg01no289_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:00 2005
         (199 letters)



>mm_chr14_104711344_104711942
          Length = 599

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttctctcgagggagatgaaaagaatttctgtgagatgatttcctgaagtatacagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 acttctctcgagggagatgaaaagaatttctgtgagatgatttcctgaagtatacagtct 339

                                                                       
Query: 61  ccactcttctctagtcattgactgatccaaacaatcctatgagtgatcacctgtctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccactcttctctagtcattgactgatccaaacaatcctatgagtgatcacctgtctcctc 279

                                                                       
Query: 121 tacctctcgtagacttgagtaaaattattgcctagatgttttgttctactgttccaactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tacctctcgtagacttgagtaaaattattgcctagatgttttgttctactgttccaactt 219

                             
Query: 181 caagttctgttttgaagg 198
           ||||||||||||||||||
Sbjct: 218 caagttctgttttgaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)