Query= MSMg01no289_m04.b1 MSMg01no289_m04.b1 CHROMAT_FILE:
MSMg01no289_m04.b1 PHD_FILE: MSMg01no289_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
(315 letters)
>mm_chr14_24660042_24660756
Length = 715
Score = 565 bits (292), Expect = e-165
Identities = 310/324 (95%), Gaps = 13/324 (4%)
Strand = Plus / Plus
Query: 5 gaattcggtaagcaccaggtccagtcccttgttaaatgcacagg-------------gcc 51
||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 192 gaattgggtaagcaccaggtccagtcccttgttaaatgcacaggtgatgctgagctggcc 251
Query: 52 tttgataataagcacacggagatctcttttggtggagataaagtgacaagaaaccaagga 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttgataataagcacacggagatctcttttggtggagataaagtgacaagaaaccaagga 311
Query: 112 catggcaaccataagacccctgcctcgatggcattctgggaaccccaaagcatgaaagcc 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 catggcaaccataagacccctgcctcgatggcattctgggaaccccaaagcatgaaagcc 371
Query: 172 acatggagagacacttcctctaggatgtctctgatcctaggatccagaacattgacttcc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acatggagagacacttcctctaggatgtctctgatcctaggatccagaacattgacttcc 431
Query: 232 tgatacctcattgtctaaagtaatagtagcctaaccttttattccttggaaggctgactt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgatacctcattgtctaaagtaatagtagcctaaccttttattccttggaaggctgactt 491
Query: 292 ccgtgatatttcttcagtagcaaa 315
||||||||||||||||||||||||
Sbjct: 492 ccgtgatatttcttcagtagcaaa 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m04.g1 MSMg01no289_m04.g1 CHROMAT_FILE:
MSMg01no289_m04.g1 PHD_FILE: MSMg01no289_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
(288 letters)
>mm_chr14_24818179_24818866
Length = 688
Score = 534 bits (276), Expect = e-156
Identities = 285/288 (98%)
Strand = Plus / Minus
Query: 1 ctataagaagcatcaataacatgggtgtctagtgcccaacaaatacctgccactagcggg 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 488 ctataagaagcatcaataacatgggtgtctagtgcccaacaaacacctggcactagcggg 429
Query: 61 cctcttggaagtgagagttaccacagttccaccaagtgagaagctgttttcgctgctccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cctcttggaagtgagagttaccacagttccaccaagtgagaagctgttttcgctgctccg 369
Query: 121 ttaaacagaagccgcagaagggcacacactagaacagatagaatttgggaaccaaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttaaacagaagccgcagaagggcacacactagaacagatagaatttgggaaccaaaagga 309
Query: 181 gcctccagaaccggcaacacgaggtcactaacctgttcaaagtcactgagactgtgtctc 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcctccagaaccagcaacacgaggtcactaacctgttcaaagtcactgagactgtgtctc 249
Query: 241 ctggctctggattgcttcgagctatggtgatggggatctggtgggtga 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctggctctggattgcttcgagctatggtgatggggatctggtgggtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
