BAC Information

Click to search

BAC

Clone NameMSMg01-290L16
Chromosome14 (Build37)
Map Location 50,373,637 - 50,373,952
singlet/doubletsinglet
Overlap gene3632451O06Rik
Upstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
Downstream geneLOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L16.T7 (MSMg01no290_l16.b1)MSMg01-290L16.TJ (MSMg01no290_l16.g1)
ACCAG419928AG419929
length730723
length of high quality
(start - end)
319 (48 - 366)292 (79 - 370)
definitionCHROMAT_FILE: MSMg01no290_l16.b1 PHD_FILE: MSMg01no290_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:21 2005CHROMAT_FILE: MSMg01no290_l16.g1 PHD_FILE: MSMg01no290_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAATTCAATCTATTTGAGACACATTGTGTGATGGTCATGCCA
ATGACATACACATGCAAAGGCTGAAAGTCCAGGAACGGTGGAAATGTGTA
AGTTATCAACAGACAGCAATGGGAACTAGGTCCTTGCTCCTTTAGTTTGG
TGTGACTGAGATGAACTAAAACAGTTGAAAGTGAAACTCAGGACTGGGAT
GCACCTCGGTTGACAGAGTGCTTGCCTAGAACACATCAAATACTGGGTTT
GATCTCAACTACCACAAAGACCTAGTGTGGTAGCACACACGTCTAATACT
AGCGCTTGAGATGAAGACAGGAGTTTCACAAGTTCAAGGTCATCCTAACC
TACATACGAATTTGGAAGCTGCCATGGTCTATATGAAATCCTTTTGAGAC
AGAGAGAAAAAGTCAGAGAGGACAGACAGAGAGATAGAGACAGACATGGA
GAGAGACATGGAGAGACACATAGAGAGAAAGATAGACAGGAAGGAAGAAG
GAAGAAAGGAAGGAAGGCACGCATTGATTTTTTTGATTTTTTTTATCTTT
ATTTTTACTTTCTATTTTATATTTCTGCCCCTGCCAACGATCCGATCTAC
TTCGTATTCTTCTACCTCGTATTTTCCTTTTTCAATAATCCCCCATTAAT
AACGCCACGTTTGTTTACTATCACTGTAAT
ATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGCAAGGCTGACCTTTGTA
CTCTTGCTTAACTAATTTCTCATGCTTGCACCTTCAGGTTCACACACATC
TCTACAATGGAGTTCTGTCTTAGGTTTTGCTGCTTTGATAAAACACTGTG
ACCAACAGCAAATACAGGAGGAAAGCCTTCAGTTTGTCTTACACCTCTTA
AGTACACACTCTTTACCTGAAGGAAGACAAGACAGAAGCCTAGGGACAGG
AACTAGAGCATGGATGAACACTGCTTACTAGAATTCAGTTTGCTGGTATT
TTATTGAGACTGTTTCCCTTTATGCTCATCCCACCCATTGTCTCTTAACT
GTCTTTGTTTTTGTTCCAAACTGCTTTTGTTATTGAAATAATGAAGGCAT
TGTTGAACACTTTTTGGTTGCAATCTCTATATACATAATTTATGAAGGTC
TGGTTGAACTTTGCTGTAAATCCATCTAGGACTAGATTTGGGTGCATGTT
TTAGACGTCTCTTGGAAGGTCTTGGTCAAAAACTCACAAGAGATTCTTGT
GTCAATATTGAGATTTTAGGTGATCTTCAGCTCTTGGAGGAAGCACTGTC
AGCCCAGATAATATATATATTTATATTTAAAAGCCTATATACCCATATAT
ATTAGGATATATATATATATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l16.b1 MSMg01no290_l16.b1 CHROMAT_FILE:
MSMg01no290_l16.b1 PHD_FILE: MSMg01no290_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:21 2005
         (319 letters)



>mm_chr14_50373434_50374152
          Length = 719

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaaattcaatctatttgagacacattgtgtgatggtcatgccaatgacataca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaattcaatctatttgagacacattgtgtgatggtcatgccaatgacataca 263

                                                                       
Query: 64  catgcaaaggctgaaagtccaggaacggtggaaatgtgtaagttatcaacagacagcaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgcaaaggctgaaagtccaggaacggtggaaatgtgtaagttatcaacagacagcaat 323

                                                                       
Query: 124 gggaactaggtccttgctcctttagtttggtgtgactgagatgaactaaaacagttgaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gggaactaggtccttgctcctttagtttggtgtgactgagatgaactaaaacagttgaaa 383

                                                                       
Query: 184 gtgaaactcaggactgggatgcacctcggttgacagagtgcttgcctagaacacatcaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgaaactcaggactgggatgcacctcggttgacagagtgcttgcctagaacacatcaaa 443

                                                                       
Query: 244 tactgggtttgatctcaactaccacaaagacctagtgtggtagcacacacgtctaatact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactgggtttgatctcaactaccacaaagacctagtgtggtagcacacacgtctaatact 503

                           
Query: 304 agcgcttgagatgaag 319
           ||||||||||||||||
Sbjct: 504 agcgcttgagatgaag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)