BAC Information

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BAC

Clone NameMSMg01-292H20
Chromosome14 (Build37)
Map Location 108,691,927 - 108,692,213
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H20.T7 (MSMg01no292_h20.b1)MSMg01-292H20.TJ (MSMg01no292_h20.g1)
ACCAG421196AG421197
length751749
length of high quality
(start - end)
288 (72 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no292_h20.b1 PHD_FILE: MSMg01no292_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:34 2005CHROMAT_FILE: MSMg01no292_h20.g1 PHD_FILE: MSMg01no292_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTTCTACTAGCAAATAGCAATAGGATTATTATTTAATAATTACAAT
CTTACGCTGTGCTTATATGAATATAATAAAATATATACTTTCATAGTGTA
ATGAATAAATGTTAAGACATAAAACCAATGGAAGCTACATTTCACTTTAT
GTTTCCATATGTACATTGAGTTACTTTGCTAGTCAATCTTCCAATAATAA
AGTCATATAGAAAGCTACTTGTGATGAGCATAAATAATCACAAAATGATG
AGGCAGCACTGTATACTTATTTTTTGCAGAAGTTTAGAATGTCCTTAAAT
CAGTCTTATATGTATGTGCACCCCCCACCCATGTCTGTATTGGATGACTG
AGTAGATTAAGCATGCCCCAAGTCATAGAGATTTATGATATTTGGCAAGG
TAAATGGGTTACTGCAGAGTTAAAATCTAAGCTTGGACCTTGGCATTGTC
TCAAATTTGCCACAAGAGATGTGCGAATTATAAAACTAGAGGAGGAAGCA
GGAAGTATTTTATATAAGCCAACTAGGAAAGATTACCATGTGAAAGGATA
AAGTATTCTGCATAACTTATCAGCTGTCATATTTCTATAGAATGCGGGAG
TATTTTTTTTTTTCTCATTTGTAGCTTTATACCAGCTTTCTTTTTGCCCC
TACATGATCCCGATGAATAATTTAATAATCTATGACCACACCCGTTTTCC
G
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGACTTGGAATGGAGAAAGC
TCTGAAGAGTGAATGTTGGGGATCCCTTTAGCTGATATGCATAGCAGTGG
GGATATGGAACCTGAAGAAGCCACCTCCCAAATAGCTAGGCAGGACCTCC
CGTGGAGGGATAAGGATACCAAACCACCCACAAAACTTTTAACCCAGCAT
TTGTCCTGTCTATAAGAAATGAAGCAACAAAGATGGAACAGAGGAGAAAT
GGCCAACCAATCATCTGTCCAACTCAAGACCCAGCTCATGGGTAAGAACT
ACTCTCTGACACTATTAATGATACTCACCCATGCTGACATACAGGAGCAT
AGTATAACAGTATCCCCACAAGCTCTACCCAGTAGCTCACTGAAACAGAT
GCAGATACACATAGCCAATCATTGGTCAGACATCCAGGACACCTATTGAA
GAGTTGGGGGAATGATAGGAACCCTACAGGAAGACCAACAAAGTCAACTA
AGGTAAACCCTTGGGAGCTCTCAGAGAGTGAGCCACACCTACCAAAGATC
ATACACAGGCTGGACCTAGCATCCCAAATATGCATTAGATGTGCAGCCTA
ACCTCCATGTGGCTCTCCCATCAGGGAGACTGTGGGTTGTCCTCTAAAGA
TTTGCCCGGCTGAATACACCCCTCCGTGTGCAATTCAGTTTCCTCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h20.b1 MSMg01no292_h20.b1 CHROMAT_FILE:
MSMg01no292_h20.b1 PHD_FILE: MSMg01no292_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:34 2005
         (288 letters)



>mm_chr14_108691727_108692414
          Length = 688

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caataggattattatttaataattacaatcttacgctgtgcttatatgaatataataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataggattattatttaataattacaatcttacgctgtgcttatatgaatataataaaa 260

                                                                       
Query: 61  tatatactttcatagtgtaatgaataaatgttaagacataaaaccaatggaagctacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatactttcatagtgtaatgaataaatgttaagacataaaaccaatggaagctacatt 320

                                                                       
Query: 121 tcactttatgtttccatatgtacattgagttactttgctagtcaatcttccaataataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactttatgtttccatatgtacattgagttactttgctagtcaatcttccaataataaa 380

                                                                       
Query: 181 gtcatatagaaagctacttgtgatgagcataaataatcacaaaatgatgaggcagcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatatagaaagctacttgtgatgagcataaataatcacaaaatgatgaggcagcactg 440

                                                          
Query: 241 tatacttattttttgcagaagtttagaatgtccttaaatcagtctta 287
           ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacataatttttgcagaagtttagaatgtccttaaatcagtctta 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)