BAC Information

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BAC

Clone NameMSMg01-292I13
Chromosome14 (Build37)
Map Location 97,701,642 - 97,813,643
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292I13.T7 (MSMg01no292_i13.b1)MSMg01-292I13.TJ (MSMg01no292_i13.g1)
ACCAG421229AG421230
length755753
length of high quality
(start - end)		579 (45 - 623)599 (77 - 675)
definitionCHROMAT_FILE: MSMg01no292_i13.b1 PHD_FILE: MSMg01no292_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:37 2005CHROMAT_FILE: MSMg01no292_i13.g1 PHD_FILE: MSMg01no292_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,701,642 - 97,702,216)(97,813,045 - 97,813,643)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAACAGACCTGACATCTGTTATTGCCCTTTTTATTTTCCAGTCTAG
TTTCTTAAACATAATCAATTAACGTATTCATGGATCAGTTAGCATATTAT
TAGTAAATTTTTGTAAATAAAAAGTAAGTACAAAACAAGTAGCCAATAGC
TGAGATCAAATTTTCTGTCAAGTTCTTTACATTTAGATATTTTTGTTAAT
GATTTCATTTATTTACATATCAAATGTTGTCCCTCTTCCTGACCCTCCTC
CTTGAGACCCTCACCACATGCCCCTCCTCTTCACCTCTAAGAGGGTGCTC
CCCCACCCACCGATCCACTCCGACTTCACCCCTCTAGTATTCCCCTTCTC
TGGGGCATCAAACCCCCACAGGACAAAGCACATGTCCTCCCACTGAGACC
AGACACAGAAATCCTCTGCTACATATATAGCAGGGGCCACAGACCAGACC
ACGTACACTCTTGGTTTTGTGGCTTAGTCTCTAGGAGCTCGGAGGTTCCA
CTTAGTTGAAACTCTTCTTCCTATGGGGTTGCAATCCTCTTCAATGCCTT
CAGCCCTTCCCCTAACATAGGGCCCCTGGAGCCCAGTCCTGTAAGTAACT
ATATCTGTCCAAGTCGGCCACTGGCAGAGCTTCTCAGAGGACAGCTATGC
CAAGCTCCTGCGTGAAAGCACAACCTGTAATCAGTTATATTTTTGGAGTT
TGGCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAATGGAATTAATGATCACTTA
TTTATATCTGAGGATGATCAGTCTACTCATTCAATAAATGATTTTCCTGT
ATTTCTTCAATTTATATTTTATATATTATAGTTAACTCTGGGAATTTATA
AAAAGTGCTATTAAACTTGCTAATCACTATTTTCCTTGAAGATTTTTTTC
TCTTAAACTCAGTCAATGTTTTAGTAATAATTATAGTGTAACTTGAATGG
TATATTGATAAAGAGTTGTTCTTTGATGACAAATGATAACTGAAAAGAAA
ACTCACAGCTCACTTTGTTTTTGCTTCGCTCACCTAACATCAGCTTCTGA
AAATTAGAGGAAGTGCACACCAAAACTTTTATTGCATTTTTTTCTCATGA
CCATTGTCATTTTTGAGGCTTAAGTAACATATTCAAACTTTCACTAGAAA
TGCGTCCCTTAACACATAGTGAAGTGTGTAACATAATCTTGCAAAATAGT
TTTCGATATAGTATAATTTGAATAACTAAAGAATTTCCTCGGCAGCTCTT
AGCCATTCTGTGATTTAGGTAAGCTGTTTCCTCTTTCATGTTCTTGAAAC
CAGGACATCTCTCCAGGAATCATCCATTATAGACGACTTTCAGTGGAATT
AATTCTTTTGTCCAGAATTGCAAATTATGATTACTAAATATTAAACTGAG
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_i13.b1 MSMg01no292_i13.b1 CHROMAT_FILE:
MSMg01no292_i13.b1 PHD_FILE: MSMg01no292_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:37 2005
         (579 letters)



>mm_chr14_97701438_97702416
          Length = 979

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaacagacctgacatctgttattgccctttttattttccagtctagtttcttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaacagacctgacatctgttattgccctttttattttccagtctagtttcttaa 264

                                                                       
Query: 65  acataatcaattaacgtattcatggatcagttagcatattattagtaaatttttgtaaat 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acataatcaattaatgtattcatggatcagttagcatattattagtaaatttttgtaaat 324

                                                                       
Query: 125 aaaaagtaagtacaaaacaagtagccaatagctgagatcaaattttctgtcaagttcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaagtaagtacaaaacaagtagccaatagctgagatcaaattttctgtcaagttcttt 384

                                                                       
Query: 185 acatttagatatttttgttaatgatttcatttatttacatatcaaatgttgtccctcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatttagatatttttgttaatgatttcatttatttacatatcaaatgttgtccctcttc 444

                                                                       
Query: 245 ctgaccctcctccttgagaccctcaccacatgcccctcctcttcacctctaagagggtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaccctcctccttgagaccctcaccacatgcccctcctcttcacctctaagagggtgc 504

                                                                       
Query: 305 tcccccacccaccgatccactccgacttcacccctctagtattccccttctctggggcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcccccacccaccgatccactccgacttcacccctctagtattccccttctctggggcat 564

                                                                       
Query: 365 caaacccccacaggacaaagcacatgtcctcccactgagaccagacacagaaatcctctg 424
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaagctccacaggacaaagcacatgtcctcccactgagaccagacacagaaatcctctg 624

                                                                       
Query: 425 ctacatatatagcaggggccacagaccagaccacgtacactcttggttttgtggcttagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctacatatatagcaggggccacagaccagaccacgtacactcttggttttgtggcttagt 684

                                                                       
Query: 485 ctctaggagctcggaggttccacttagttgaaactcttcttcctatggggttgcaatcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctctaggagctcggaggttccacttagttgaaactcttcttcctatggggttgcaatcct 744

                                              
Query: 545 cttcaatgccttcagcccttcccctaacatagggc 579
           |||||||||||||||||||||||||||||||||||
Sbjct: 745 cttcaatgccttcagcccttcccctaacatagggc 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_i13.g1 MSMg01no292_i13.g1 CHROMAT_FILE:
MSMg01no292_i13.g1 PHD_FILE: MSMg01no292_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:37 2005
         (599 letters)



>mm_chr14_97812741_97813739
          Length = 999

 Score = 1104 bits (571), Expect = 0.0
 Identities = 592/599 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatggaattaatgatcacttatttatatctgaggatgatcagtctactcattcaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 tctaatggaattaatgatcacttatttatatctgaggatgatcagtctactcattcaata 844

                                                                       
Query: 61  aatgattttcctgtatttcttcaatttatattttatatattatagttaactctgggaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aatgattttcctgtatttcttcaatttatattttatatattatagttaactctgggaatt 784

                                                                       
Query: 121 tataaaaagtgctattaaacttgctaatcactattttccttgaagatttttttctcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tataaaaagtgctattaaacttgctaatcactattttccttgaagatttttttctcttaa 724

                                                                       
Query: 181 actcagtcaatgttttagtaataattatagtgtaacttgaatggtatattgataaagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 actcagtcaatgttttagtaataattatagtgtaacttgaatggtatattgataaagagt 664

                                                                       
Query: 241 tgttctttgatgacaaatgataactgaaaagaaaactcacagctcactttgtttttgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgttctttgatgacaaatgataactgaaaagaaaactcacagctcactttgtttttgctt 604

                                                                       
Query: 301 cgctcacctaacatcagcttctgaaaattagaggaagtgcacaccaaaacttttattgca 360
            | ||| |||||||||||||||||||||||||||||||| | |  |||||||||||||||
Sbjct: 603 tgttcagctaacatcagcttctgaaaattagaggaagtggataggaaaacttttattgca 544

                                                                       
Query: 361 tttttttctcatgaccattgtcatttttgaggcttaagtaacatattcaaactttcacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tttttttctcatgaccattgtcatttttgaggcttaagtaacatattcaaactttcacta 484

                                                                       
Query: 421 gaaatgcgtcccttaacacatagtgaagtgtgtaacataatcttgcaaaatagttttcga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaaatgcgtcccttaacacatagtgaagtgtgtaacataatcttgcaaaatagttttcga 424

                                                                       
Query: 481 tatagtataatttgaataactaaagaatttcctcggcagctcttagccattctgtgattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tatagtataatttgaataactaaagaatttcctcggcagctcttagccattctgtgattt 364

                                                                      
Query: 541 aggtaagctgtttcctctttcatgttcttgaaaccaggacatctctccaggaatcatcc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aggtaagctgtttcctctttcatgttcttgaaaccaggacatctctccaggaatcatcc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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