BAC Information

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BAC

Clone NameMSMg01-293C15
Chromosome14 (Build37)
Map Location 91,224,334 - 91,224,661
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451, LOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C15.T7 (MSMg01no293_c15.b1)MSMg01-293C15.TJ (MSMg01no293_c15.g1)
ACCAG421685AG421686
length726948
length of high quality
(start - end)
332 (38 - 369)---
definitionCHROMAT_FILE: MSMg01no293_c15.b1 PHD_FILE: MSMg01no293_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:28 2005CHROMAT_FILE: MSMg01no293_c15.g1 PHD_FILE: MSMg01no293_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
GATCTCCACTTGCCTGAGAATATTAACCAGAAAAGATAGTTTAAAAAGCA
AATTTATAAATGATTACCTGATGCCATTAAGTTGTCATTGTTTATGGACA
TTGGTTAGAATGCTTGTCTAATAAGGTTTAGAGGAACATCTACAGCAAAA
TAAATAAGTAAAGATTTTTTTCATATAGGAAACAATTTAAAACTCATGAT
TGGAATTACAATTTAAGTGAGTACATACCATATATGTTCCTTTGGGCCTG
GGTTACCTCACTCAGGATATGCCCAAGTTCTATGCATTTGCCTGACAAAT
TCATAATGTCTTTGATTTTAACACCTGAATAATGTTCCATTGTGTAGATT
ACCATATTTTCCCCATTTATTCTTTATTTGTAGGATATGATATGCCAGGT
TGGGAAGATACTCAGGCCTGGGAATTCATTCACCCTTTCAGAGATGAAGG
GGAGTAGAGAATGGGGGAGGGGCTATGTGAAGGGAGATAAGGAGGTGTGT
AATAGAGTGTATGATTATATGGAAGATTTTAGAGTGTTATTGTACAGCCT
TTATTTTTTCTATTTTAATCTTTCTCCCCCCCTCTTCCTTCTTCTTATTC
TCCTTCCTTCATTTTATCTACATTAGCTATTTTCCTTTTCACTTTTTCTT
CCTTATTTCCATCCTCTCTTTTCTTT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTTGATTACGGAAGACAGCTCCCTTCCAG
TTTACCTTTTTTTTTGTTTACAAGGATAACTCTTATGAGAGGGTTTCCGA
TTTACCGAATACTTTTTTTATACCTAAACCAGTATGTTCACTGTCTGACA
AAATAATTCGGATCGTCTTCAGCCTAAAGTTCTTTAAAGAGATTTCAGAT
AATGGTTCAAATTCTCGGTTCATAGAGCTGTCTTTTACGATGTTATTCGG
CCCTATCAATCATCGGCGCATACCAGGTCCACGTATCTCGTTATCTCTGG
GGATTTAGCCTGGGTCTCCCCTTTGGTATATTTCAAACCCTTTTTTTATT
TTATCCTCCTCCCCCCCCGTTGGGTATGATTTTCATCCGTATTACCCCTT
TGCCCCCTTCTTCTCATTTGGGGTGGAGCAATGAAAGTATGCGTATCCGT
TTGTGGGGATGGGATAACTACCGCCTTTTTTTCTACGCCCGCGTGTTACA
ATTTCCTATCGCGATAATTTTTTCCGCAACTCCTTACTTTATTGCGCGTC
ACGGTCGCTACTTTCTAGTTACGATAATATTGGCGCGTCGATCTATTCGT
TATGATCTCGGGCCGCGGCGGCGTCGTACTTCATTTCTGTTGTCAGCACT
CTGAGCGTTTGTCGGCCTGTATCGTGCCGGTTCGACTCCTCTTTAATTAC
CCTGCTTTTATCGCATGCGCATACTTTGTTAGAGAATATGCTCCCCGCCT
CCCTTCTTACTCTCCGTATCATCGTCGATGGAGCTGATTTGGATGCTGGC
TATTTCTTGCGCATCTTCTACTCCTGTTTCGCGCCCTCCCGTCTGTCTTC
GGCGCGCGCACGTTATGTCTACGTCACCTTTACTCCATGCAGACCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c15.b1 MSMg01no293_c15.b1 CHROMAT_FILE:
MSMg01no293_c15.b1 PHD_FILE: MSMg01no293_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:28 2005
         (332 letters)



>mm_chr14_91224236_91224967
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagatctccacttgcctgagaatattaaccagaaaagatagtttaaaaagcaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaattctcagatctccatttgcctgagaatattaaccagaaaagatagtttaaaaagcaa 367

                                                                       
Query: 65  atttataaatgattacctgatgccattaagttgtcattgtttatggacattggttagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atttataaatgattacctgatgccattaagttgtcattgtttatggacattggttagaat 307

                                                                       
Query: 125 gcttgtctaataaggtttagaggaacatctacagcaaaataaataagtaaagattttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcttgtctaataaggtttagaggaacatctacagcaaaataaataagtaaagattttttt 247

                                                                       
Query: 185 catataggaaacaatttaaaactcatgattggaattacaatttaagtgagtacataccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 catataggaaacaatttaaaactcatgattggaattacaatttaagtgagtacataccat 187

                                                                       
Query: 245 atatgttcctttgggcctgggttacctcactcaggatatgcccaagttctatgcatttgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atatgttcctttgggcctgggttacctcactcaggatatgcccaagttctatgcatttgc 127

                                       
Query: 305 ctgacaaattcataatgtctttgatttt 332
           ||||||||||||||||||||||||||||
Sbjct: 126 ctgacaaattcataatgtctttgatttt 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)