BAC Information

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BAC

Clone NameMSMg01-293I09
Chromosome14 (Build37)
Map Location 80,317,082 - 80,398,446
singlet/doubletdoublet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293I09.T7 (MSMg01no293_i09.b1)MSMg01-293I09.TJ (MSMg01no293_i09.g1)
ACCAG421953AG421954
length729729
length of high quality
(start - end)
283 (429 - 711)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no293_i09.b1 PHD_FILE: MSMg01no293_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:57 2005CHROMAT_FILE: MSMg01no293_i09.g1 PHD_FILE: MSMg01no293_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,317,082 - 80,317,364)(80,398,159 - 80,398,446)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTCGGGGTGCTCATTTTTACTGCCTGGGATTTCTTTTTATTCTTCTCCA
ACATGCAGCTCATGGTTCACAATTCTTAACAGCTCTGGCAACAGCTGCTG
AGTTAGTGGGAACACAACGCTCCCAGGAACACGATGGGTTCCGGCTATTA
GAGGGGAATTCTTGCCCTTTGCCCATCTCCTCAAACCTACCAGGAAAGCA
AAGAAAAAATATGTGTCCATACATATCCTCTTAGACAGGCAGCAAATGGG
CTGGCATCTTGCCATCTGGCCGTATTGGATAAAGAAACATGGGGCTGATG
AGTATCCTTTTTTCCAACCCCACCCCGCGCTGCTCTTGCTCCTGCCCCAA
GCAGAGTATTTACACCCCCTCAGAATTGTGCCAGCTACTCATGGGGGCGG
GCATGCATGTCCACTTAAAGCCACAGGGACCTTTGTAGCACTGAACCCAT
CAGAATGACTCTGCAGTTCTCTGGGACTCTTGTTTTAATGGCTTTCTTTG
GAGAGACCTTCCTGCCCCTCCACACCCTGGAAAACCCGCTAAGGAAGTGC
GAGCATGCAGGCTGTGCCTGTAAATCTGTTCTCTGCACACACTGGAATCC
TTCCCACCTCTGTGTGTGCTGTTCAACCCACTTGGAACTCCCTCCTTTCT
CCCATTAGCACCCGTTTACCTAAATTTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTTGATCTCAACACTTATGGTGTTGCCTTT
ACCTCTACCCACACTGAACCATCTTTGTCAAGTCATCTGAGAGTATCTAC
GCAGGCCAATGTTATACCTGGTCCATGGAACATGGGATTGGAAGCAGCTA
AAGGAGACCTAGGAAGAATAAGGATGCAATGCCAGAAGCAACATCATCCA
CCTAACATCATTCAAAAGGAAATTTGTGGTGAAGGACAAGACCCGAGACA
GTGGACTCAAGGCTAGCTGTTCAAAGAGCAAGAAACTATTTTTAAGCTCA
TATGTCTCTTATTGTTCCCCACCCCACCCCTTCATGTTAAAACATCAATA
AGCAACAAATTAGCCCCACCACCAGAAAGCCCTATACATATTTGGGATAT
ATTAGCAGTAAAATAAATGCTGTCAGTTTAATATTCAAACTGAACTAGAT
GTCCCTTTTTTTTTCCTTCTGGGAACTCGCTATTGAAACAGGATATGGAC
TGTGAAATTCACTATTCCCTGTCGGAAGTCATCCAGCCTTGGCTCCTTTA
ACAAGATGTTCTAGTCTCACCAATGCTTAGCTCAAGACAGAGAAAGTATA
GGGCATTTGTGAGAAAGAAAACTGATGTACTGACTCCATTATACTAAGAT
TGAATGCTATGGATGCGGGATGTACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_i09.b1 MSMg01no293_i09.b1 CHROMAT_FILE:
MSMg01no293_i09.b1 PHD_FILE: MSMg01no293_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:57 2005
         (283 letters)



>mm_chr14_80316882_80317564
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccagctactcatgggggcgggcatgcatgtccacttaaagccacagggacctttgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccagctactcatgggggcgggcatgcatgtccacttaaagccacagggacctttgtag 260

                                                                       
Query: 61  cactgaacccatcagaatgactctgcagttctctgggactcttgttttaatggctttctt 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cactgaacccatcagaatgactctgcagttctctgggactattgttttaatggctttctt 320

                                                                       
Query: 121 tggagagaccttcctgcccctccacaccctggaaaacccgctaaggaagtgcgagcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagagaccttcctgcccctccacaccctggaaaacccgctaaggaagtgcgagcatgc 380

                                                                       
Query: 181 aggctgtgcctgtaaatctgttctctgcacacactggaatccttcccacctctgtgtgtg 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aggctgtgcctgtaaatctgttctctgcacacattggaatccttcccacctctgtgtgtg 440

                                                      
Query: 241 ctgttcaacccacttggaactccctcctttctcccattagcac 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttcaacccacttggaactccctcctttctcccattagcac 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no293_i09.g1 MSMg01no293_i09.g1 CHROMAT_FILE:
MSMg01no293_i09.g1 PHD_FILE: MSMg01no293_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:57 2005
         (288 letters)



>mm_chr14_80397959_80398646
          Length = 688

 Score =  480 bits (248), Expect = e-140
 Identities = 278/288 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgatctcaacacttatggtgttgcctttacctctacccacactgaaccatctttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 acttgatctcaacacttatggtgttgcctttacctctacccacactgaagcatctttgtc 429

                                                                       
Query: 61  aagtcatctgagagtatctacgcaggccaatgttatacctggtccatggaacatgggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aagtcatctgagagtatctacgcaggccaatgttatacctggtccatggaacatgggatt 369

                                                                       
Query: 121 ggaagcagctaaaggagacctaggaagaataaggatgcaatgccagaagcaacatcatcc 180
           ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 368 ggaagcagctaaaggagaccttggaagaacaaggatgcaatgctagaagcaacatcatcc 309

                                                                       
Query: 181 acctaacatcattcaaaaggaaatttgtggtgaaggacaagacccgagacagtggactca 240
           ||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct: 308 acctaacatgattcaaaaggaaatctgtggtgaaggacaagaccagagacagtagactca 249

                                                           
Query: 241 aggctagctgttcaaagagcaagaaactatttttaagctcatatgtct 288
           || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 248 agactagctgttcaaagagtaagaaactatttttaagctcatatgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)