BAC Information

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BAC

Clone NameMSMg01-294I11
Chromosome14 (Build37)
Map Location 67,745,321 - 67,910,649
singlet/doubletdoublet
Overlap geneEbf2
Upstream geneChrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a
Downstream geneEG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I11.T7 (MSMg01no294_i11.b1)MSMg01-294I11.TJ (MSMg01no294_i11.g1)
ACCAG422677AG422678
length733737
length of high quality
(start - end)
318 (41 - 358)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no294_i11.b1 PHD_FILE: MSMg01no294_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:14 2005CHROMAT_FILE: MSMg01no294_i11.g1 PHD_FILE: MSMg01no294_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,910,337 - 67,910,649)(67,745,321 - 67,745,606)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTCCTTGCCCATCTGAAATGAAAATCATAAGTCAGATTGATCCCGTTT
GGAGCCCAGCCTCTTGTCCCGTGTCTCAAAAAACCATGCTGTTATAAAAA
GAATTAGCCTATCCCTCTTTTCTCAACGAAATTACCATCTCCAGCATGGA
ATGGAAAGCCTCTAGCTTTTCATGCCAAGAGAAGGGACCCGGACTGTCCT
CGCTGCTGCAACACACTAGCCTGGAAATATTAAATTTACTCGGTGTTTTA
TTAGACACAGCTTAACAACCCTGAGTTTACAAAACTCAGCCAAACAGCAT
CAGGCTTTTTTATAAACTTTTGCTAACTAGCCCACATAGTTCCCATATGC
TACGAGACGCCCCTGCAGCCAGATCAATACCTTATAATTATAAACACACG
TCTTTCAGCTCTTCTGTGTATTCTTCCCAGGCAGAACGGAAATATGCCAC
TTAAATTAGCACTTGGAGTGCAGCGTGGGTGCCAAATTTGGGCTAGCACA
AACAGGGTAAATAAAACAGCACCAAATTAAAATGGCAAAATAAACTTCTT
TCCGCTCCAATGGAAACTGCTAAGTCCTCGCTGAATGGCAGCTAATGGGT
CTGGGAACCAGGCAGCCCTCCCTCCGCAGCACTTGGCGTTTGACCATGCT
TCTCTCATCCAAGGATCTCGAAGCAATTTCTTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTTCAGAGTGCAAAAAATCAGTCACCC
TTAAAACTCGCTTGAGCTCACACACCCGAGCTGTTTAATTATGCAGACTC
CTCCTGGCACCAGTTTCCTTCTAGTAATGGGGGTTATTGAATCGACTTCA
TACAGCCCCAGCAGAATATCTGTGGACACACCTAGCTTGAAAGCAGGAAG
GCTGTGTGATTTTTATGCGAAGGGTCGAGAGGATGAAAGATGCTTGTGGA
ATGAGCAAATGAAAAAAATTCATTTTTAAACTTATTTTTTTTTTAAAACA
TCACATCTGTTTGTCTATTTGCCCACTTATTTTGTGTCCAAGTGGGGAAG
CATGAATGTGGACCCTAAAGGGAAACAGAAAGGAGTCAGTTCTACCTTTC
CACAGGAGTCCTGGGCCTCGAAGTCAAGTTGTTGGAGGGGAGCGTCTTCA
CCTGCTGGGCCATTTCACTGGCCCCAGTTTTTGGAGTTTTCTATTTATGC
TGATGCCATGCTTATCAGAGTTGACCTGTTTTTTTGTTTGTCTGTTTGTT
TGTTTGTTTTTTATGAATCCTTTTGTTCATGTAACACAGATCTCACTTAA
ATAATACCTATCAATATATGATTCGTGGTTTGAGTGGCGAGGTGTCCCTT
ACTGAGGCCCCGAAGCATTCTACCTGTTAGCTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i11.b1 MSMg01no294_i11.b1 CHROMAT_FILE:
MSMg01no294_i11.b1 PHD_FILE: MSMg01no294_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:14 2005
         (318 letters)



>mm_chr14_67910133_67910850
          Length = 718

 Score =  551 bits (285), Expect = e-161
 Identities = 306/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttccttgcccatctgaaatgaaaatcataagtcagattgatcccgtttggag 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctcttccatgtccatctgaaatgaaaatcataagtcagattgatcccgtttggag 458

                                                                       
Query: 65  cccagcctcttgtcccgtgtctcaaaaaaccatgctgttataaaaagaattagcctatcc 124
           ||||||||| ||| |||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cccagcctcgtgttccgcatctcaaaaaaccatgctgttataaaaagaattagcctatcc 398

                                                                       
Query: 125 ctcttttctcaacgaaattaccatctccagcatggaatggaaagcctctagcttttcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctcttttctcaacgaaattaccatctccagcatggaatggaaagcctctagcttttcatg 338

                                                                       
Query: 185 ccaagagaagggacccggactgtcctcgctgctgcaacacactagcctggaaatattaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccaagagaagggacccggactgtcctcgctgctgcaacacactagcctggaaatattaaa 278

                                                                       
Query: 245 tttactcggtgttttattagacacagcttaacaaccctgagtttacaaaactcagccaaa 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tttactcggcgttttattagacacagcttaacaaccctgagtttacaaaactcagccaaa 218

                        
Query: 305 cagcatcaggctt 317
           |||||||||||||
Sbjct: 217 cagcatcaggctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_i11.g1 MSMg01no294_i11.g1 CHROMAT_FILE:
MSMg01no294_i11.g1 PHD_FILE: MSMg01no294_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:14 2005
         (286 letters)



>mm_chr14_67745121_67745806
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcagagtgcaaaaaatcagtcacccttaaaactcgcttgagctcacacacccgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcagagtgcaaaaaatcagtcacccttaaaactcgcttgagctcacacacccgagc 260

                                                                       
Query: 61  tgtttaattatgcagactcctcctggcaccagtttccttctagtaatgggggttattgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttaattatgcagactcctcctggcaccagtttccttctagtaatgggggttattgaa 320

                                                                       
Query: 121 tcgacttcatacagccccagcagaatatctgtggacacacctagcttgaaagcaggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgacttcatacagccccagcagaatatctgtggacacacctagcttgaaagcaggaagg 380

                                                                       
Query: 181 ctgtgtgatttttatgcgaagggtcgagaggatgaaagatgcttgtggaatgagcaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtgatttttatgcgaagggtcgagaggatgaaagatgcttgtggaatgagcaaatg 440

                                                         
Query: 241 aaaaaaattcatttttaaacttattttttttttaaaacatcacatc 286
           ||||||||||||||||||||||| |||||||  |||| ||||||||
Sbjct: 441 aaaaaaattcatttttaaacttaatttttttaaaaaatatcacatc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)