BAC Information

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BAC

Clone NameMSMg01-294K02
Chromosome14 (Build37)
Map Location 97,119,136 - 97,291,919
singlet/doubletdoublet
Overlap geneLOC668654
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294K02.T7 (MSMg01no294_k02.b1)MSMg01-294K02.TJ (MSMg01no294_k02.g1)
ACCAG422754AG422755
length736737
length of high quality
(start - end)
323 (40 - 362)292 (70 - 361)
definitionCHROMAT_FILE: MSMg01no294_k02.b1 PHD_FILE: MSMg01no294_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:21 2005CHROMAT_FILE: MSMg01no294_k02.g1 PHD_FILE: MSMg01no294_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,119,136 - 97,119,453)(97,291,628 - 97,291,919)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AACACCACCGAGGCTAAGAAGGAAAAATTGCAATGTCAGAGTCAGTCTGA
GCAACATAATGCATTTTTAGTCAGATTAGACTATGCAGAGAGGCCTTTTC
TTTTTAGGAAAAAATAATATATAAATAACTGGGTAAAGCTAAACACCTAC
TATGAAATTAACATAAACACAAATAAAACATAATAGCAAAATTAAAACCT
AAATGAAACTTAGGTTTTAAAAAGAAAACCTAAATATGAAACTTTAAACC
CACAGAACAAATTATGATCAAAACATTTTCAGTTGAATCTTTAAAAAATA
TTCAAAACTCTCTTACATATGTGTATTATTTTAAAAACCTCAACAGTTTC
CCAGTAATTATGTGCATTAATTATTAAAGAATAAACTAGATAACAATATA
GACAATGACATCCTATTGCTAATTTCAGACTGCTGTGTTCTAAATATTAA
TCTCAGTGGGAAAACCTAACTTGAGACCTACTAGTTCCTATTGCTCCCTG
CTGCAGTTGACAGGGCAGTCATCATGGTTTTTGTAAGTGAAATTTGAGTT
TGGACCTTTCCTACCATCAAGTAGGGCAGAAATAACTTGAAGCTATGACC
CCTTGATGACTAGAAAAACACTATCAACTGTGCTGTATAACTTTCAGTGA
ATTTCTACTGACTCTGACATATACATCATACCACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTCTGCTACAAAGATTTATGTCATGTTGT
TTCAGAGAAAATATAAATAAATGACAAAATTGTATTAAGTGAATTAAGCC
AGTCCCCCTCATAAAGCCCTACCATATGTTTTCTCTAATTTGTGGCTTCT
AGATTTTGCATCATAAAAAAAAAACAATGCACTTAATAAATGAAAGGATA
ATAAAATTGACTAGAGAAACAAAGGGGACAAATGTGAAGGAGAAGTAGGA
AAATATAGAGTAGAGGAAAATGTTTCGGGGCGGTCAACATGTACTTAGCA
TACAATAAATATTTATTAAAACCCCCCCTAACTAAGAAAATTAAAATTAT
ATTTAAAAACAGGCCATTATACTGAATATAAACTAAAGTTTTCGCGCTTC
TGATTAATACTGACAAATTAGTATAATTATTCAGTTATTTTTATACTTAA
TGTTGCTTAAAAATATAGCCACTGTTTTTCCTTGATATAGACTTCTCTCT
GAGTTAACACACTCTGCTGTTAGATATGTCTATTTAATGCCATAGTTTTC
AAGAGTGATTAGTGACAGACATAAACCTCCTCTTATACACTCTGCCTCAA
CAGGTGTATGCCATTCTCTTCGGAGTAATTCACTAGGGTTCATAACCGCA
TGTGTGGAGAAAACGCATGCACCACTTTTACCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_k02.b1 MSMg01no294_k02.b1 CHROMAT_FILE:
MSMg01no294_k02.b1 PHD_FILE: MSMg01no294_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:21 2005
         (323 letters)



>mm_chr14_97118933_97119655
          Length = 723

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaacaccaccgaggctaagaaggaaaaattgcaatgtcagagtcagtctgagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaacaccaccgaggctaagaaggaaaaattgcaatgtcagagtcagtctgagc 263

                                                                       
Query: 64  aacataatgcatttttagtcagattagactatgcagagaggccttttctttttaggaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacataatgcatttttagtcagattagactatgcagagaggccttttctttttaggaaaa 323

                                                                       
Query: 124 aataatatataaataactgggtaaagctaaacacctactatgaaattaacataaacacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aataatatataaataactgggtaaagctaaacacctactatgaaattaacataaacacaa 383

                                                                       
Query: 184 ataaaacataatagcaaaattaaaacctaaatgaaacttaggttttaaaaagaaaaccta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataaaacataatagcaaaattaaaacctaaatgaaacttaggttttaaaaagaaaaccta 443

                                                                       
Query: 244 aatatgaaactttaaacccacagaacaaattatgatcaaaacattttcagttgaatcttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatatgaaactttaaacccacagaacaaattatgatcaaaacattttcagttgaatcttt 503

                             
Query: 304 aaaaaatattcaaaactc 321
           ||||||||||||||||||
Sbjct: 504 aaaaaatattcaaaactc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_k02.g1 MSMg01no294_k02.g1 CHROMAT_FILE:
MSMg01no294_k02.g1 PHD_FILE: MSMg01no294_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:21 2005
         (292 letters)



>mm_chr14_97291428_97292119
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttctgctacaaagatttatgtcatgttgtttcagagaaaatataaataaatgacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcttctgctacaaagatttatgtcatgttgtttcagagaaaatataaataaatgacaaaa 433

                                                                       
Query: 61  ttgtattaagtgaattaagccagtccccctcataaagccctaccatatgttttctctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttgtattaagtgaattaagccagtccccctcataaagccctaccatatgttttctctaat 373

                                                                       
Query: 121 ttgtggcttctagattttgcatcataaaaaaaaaacaatgcacttaataaatgaaaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttgtggcttctagattttgcatcataaaaaaaaaacaatgcacttaataaatgaaaggat 313

                                                                       
Query: 181 aataaaattgactagagaaacaaaggggacaaatgtgaaggagaagtaggaaaatataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aataaaattgactagagaaacaaaggggacaaatgtgaaggagaagtaggaaaatataga 253

                                                               
Query: 241 gtagaggaaaatgtttcggggcggtcaacatgtacttagcatacaataaata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtagaggaaaatgtttcggggcggtcaacatgtacttagcatacaataaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)