BAC Information

Click to search

BAC

Clone NameMSMg01-295H10
Chromosome14 (Build37)
Map Location 104,937,760 - 104,937,968
singlet/doubletsinglet
Overlap genenone
Upstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneD130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295H10.T7 (MSMg01no295_h10.b1)MSMg01-295H10.TJ (MSMg01no295_h10.g1)
ACCAG423351AG423352
length752799
length of high quality
(start - end)
315 (41 - 355)---
definitionCHROMAT_FILE: MSMg01no295_h10.b1 PHD_FILE: MSMg01no295_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:24 2005CHROMAT_FILE: MSMg01no295_h10.g1 PHD_FILE: MSMg01no295_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACTGGTGAAATACTATGTTCTGTGTGTTAGAGGACAAGAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAACTACCATGGATATAAAGCCATATATGATGAACTAGT
CTTACAAATCCTTGCATGGTGGTTTCCCAGGAAACCACAACTACAGATGT
ACAAACTGAAATACAGATGTGGGTATTTCAAATAACTAACTCTAATCTAA
TCTAATTCCTAATGAGGCCTTTCGTTTTCCGACTTTTATGCAGAATACTG
TGTGCCTCAATGAGTTCTCCCAACCCCCCCTCTTCCANCCATAAACACTG
GCGCGGTTTGCCCCCCCCGCAAAAAAAAAAAAATTAGGTGGGGGGGGGGG
GTATCATATGTGATCTCCATAGACTGGCCTCTAGCACACCACCAGGTAAC
CTTGTTCTCCATGATCTCTCCAGGGGTCCCGCTGAAACATCGCCTTGCAT
GTTGTTTGCCACCTCTGCGATACACACATCCCTATTATTTCCTCTCCATA
TGCATTCCTTCTGCCAGGATACCTACTTATGCTCCTACCTTTGTTGTATG
TTTGCCTGCGAAACTTGTAACTCCTCGTACCTTCTCTTGCTTCTCTCCAT
TTCCATGCGTTCCTTGTTCCGTTCCTATTCCTTCCTCCAGTTCTTCCGTT
GT
TGAAGAGGGAGGGGCGAGCCAATCGAGTCACCGCGAACCCAAAGAATATC
AGAGTGGATAAGAGAATACGTGCGGGAAGCGGAGGTAGAGTNCGTTCGCC
GTNCGGCTTTCCTCCTTTGCCCCTTTTCGGGGGGGGCTGCGGAGAGGCTG
CGGGAGCATCGATAAAAAGGGGAAGGGCATAAGCGATGTACGCTTACTAC
TACCGTACGTCCCGTTTCGTGTTCCGTACTGCCCGTTTCCATCGGACGCC
GACGGATTGGGGAACGGTGAAGGGAGGGATAGAAGGCGAGAAGAAGCAAA
ACGAAAAGAAGGAGAGAGTAGATTGTATAGCGAAGGAAGTGAGCAAGGAC
GGGAGGCGTTTTGAGTAATTTACCCGAGACGGCCGCCAGGGTAGGGAGGA
AGGTTAAGGGAGGTCCCCCCCCCCAAAAATTCTATTTAAAAAGGCGGGGC
GGTGCGGGGGATCGTGCACACACTAAACAGAATAGTATTGGGGCGTCCGG
AGTATAAAAGTTACACATGGGCGAGGGGGAAGGCGAGGGTAGGGGAGACA
GAAGGAAAGGAGGGTGGGAATGTAGGAGTGACGATAAAGGTGCAAATTAG
ATTACGAAACGGTGAGAAAGACCATGCGATAGACATAGACGAGATGATGG
GGGCGTGGGCGGGCGGTGGGGAGCCGGGATAGAGGCCCTAGGTCAGGCGA
TAACAGCATCGGCGAAAGTACCGCGAGAATAGCACAAAAATACGACGATG
GGAAAACGGCGTAATCCGGCTTAGGTGTTCGCATACTTACCAGAAGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_h10.b1 MSMg01no295_h10.b1 CHROMAT_FILE:
MSMg01no295_h10.b1 PHD_FILE: MSMg01no295_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:24 2005
         (315 letters)



>mm_chr14_104937437_104938151
          Length = 715

 Score =  373 bits (193), Expect = e-108
 Identities = 205/209 (98%)
 Strand = Plus / Minus

                                                                       
Query: 107 agagagagagagagagaactaccatggatataaagccatatatgatgaactagtcttaca 166
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 532 agagagagagagagagaactaccatggatataaagcaatatatgatgaaccagtcttaca 473

                                                                       
Query: 167 aatccttgcatggtggtttcccaggaaaccacaactacagatgtacaaactgaaatacag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aatccttgcatggtggtttcccaggaaaccacaactacagatgtacaaactgaaatacag 413

                                                                       
Query: 227 atgtgggtatttcaaataactaactctaatctaatctaattcctaatgaggcctttcgtt 286
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 412 atgtgggtatttcaaataactaaatctaatctaatctaattcctaatgaggccattcgtt 353

                                        
Query: 287 ttccgacttttatgcagaatactgtgtgc 315
           |||||||||||||||||||||||||||||
Sbjct: 352 ttccgacttttatgcagaatactgtgtgc 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)