BAC Information

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BAC

Clone NameMSMg01-295I21
Chromosome14 (Build37)
Map Location 55,190,049 - 55,354,706
singlet/doubletdoublet
Overlap geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
Upstream geneLOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e
Downstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I21.T7 (MSMg01no295_i21.b1)MSMg01-295I21.TJ (MSMg01no295_i21.g1)
ACCAG423415AG423416
length763762
length of high quality
(start - end)
318 (43 - 360)289 (72 - 360)
definitionCHROMAT_FILE: MSMg01no295_i21.b1 PHD_FILE: MSMg01no295_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:31 2005CHROMAT_FILE: MSMg01no295_i21.g1 PHD_FILE: MSMg01no295_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,190,049 - 55,190,362)(55,354,420 - 55,354,706)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTTTTGTCAGTTCTTCCCAGGTAGCTACTAGACAGCAACAGTCAAGGA
TCATGGATCCTGTAAATCTTACCCCAATTCCTTCTTCTTATACAGAAAAG
AAAGCTGAGTTCCAGCTGTTTCCGACCAGTAGCAGAAAAGGGAGCCGATT
CACGTAGCTCAGGCTGGAGGGCAGCTGTGTCCAGAATCAGGGAAGGGACA
GATCACAGACGCCCTTGGAGGCTGAGACTACGGACTGGCTCTCACAGGGG
ATCACCGTGAGGCAGCTTTGGGGAGGACGGGTAAGAAAATGACCATCTAG
CAAAAGGCTCTCTATTTGTAATGCCACCACCTCTTGCCCTTCAGGCCGGT
GGCCCCCAAAACCCAGCTGAAGGGGCGTTCCTTACCTTCTCTAGAATCAA
GTGGCCGCAGACACAGCACTTCTCAGCTGCCTCCTGAAACCCTGAAAACT
AGAGAGGAGACAGGACAGAGTTACCACGCTGAAAACTGTGATGGAACCCG
CCGGCCGCCGGGGTCCCACCGTGAAAGCCAAGCCTCGGCCCTTCACTCAC
CAGATAGTCTTCCTCACAGTAGACAGAGCCATTGACGCTGTAGAAAGCCT
TGCACCGCAAAGTTCGTCCTAGAAGCAGCAGAGGAGGCGCTGGAGGTTAA
CGCTGGAGCCCCCACACAGGGCTCTTCCTCTTCTGGCCCCTGCTCCCAAT
CCTGACAGGACAT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCTGGCTGGAGCCAAAGAATGCATTTGA
GAATTTCCAAGAACCTGACATCGGCCTCGTTGCTCTGGCATTCCTCCAGG
GCTCCTTTGCCTATGGTGGCTGGAACTTCCTTAATTATGTGACTGAGGAA
CTTGTGGATCCTTACAAGTGAGTCAAACGAGGTTAGCTCTTCTGTTCACC
CTTAGGCCGCACAGGACCCACCTCCGGAAAAAGGAAACACAGACTCACTT
CTTGCCCTTCTCCAGGGACATGTCCTGGTCTACCGTGAAGCCACGGTTGA
TGTCCCAGTAATTTTATCCATTCCCCACCCACCCTGTTAAGAGAAGGGGA
AGGATCCTCTGACCGCCCCAGGGCAAGAGAACAATCAAGAGCTGTTCGCA
GAGCTGCGACAGAGAAGGAACTATCCTGGGTTGTCTCGGCATTTTATCTG
TTTGGAGCCAGGCCCAGCTTTATATCTTAAGACAGTAGAAAGGGTGCAGG
GTCCAAATCTGAGTCAGGAGGTGATAATCAGGTGAAACATATTTCTAGAC
CTAAACTGTTCCATTTCCTCTAAAGAATCCTGCCCCACCTGAGTCAGAAC
CTACCTCCCAAATAGAGGAACAGCCAAGAGACAGCAGGTCGAGGCTCCTG
GAGTTTCCCAGCAGAACATGTCCCCTGGTAAAGGCTTCCCTCTGACCTCC
TCTNCCTCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i21.b1 MSMg01no295_i21.b1 CHROMAT_FILE:
MSMg01no295_i21.b1 PHD_FILE: MSMg01no295_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (318 letters)



>mm_chr14_55189845_55190562
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttttgtcagttcttcccaggtagctactagacagcaacagtcaaggatcatgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttttgtcagttcttcccaggtagctactagacagcaacagtcaaggatcatgg 264

                                                                       
Query: 65  atcctgtaaatcttaccccaattccttcttcttatacagaaaagaaagctgagttccagc 124
           |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcctgtaaaccttaacccaattccttcttcttatacagaaaagaaagctgagttccagc 324

                                                                       
Query: 125 tgtttccgaccagtagcagaaaagggagccgattcacgtagctcaggctggagggcagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttccgaccagtagcagaaaagggagccgattcacgtagctcaggctggagggcagct 384

                                                                       
Query: 185 gtgtccagaatcagggaagggacagatcacagacgcccttggaggctgagactacggact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgtccagaatcagggaagggacagatcacagacgcccttggaggctgagactacggact 444

                                                                       
Query: 245 ggctctcacaggggatcaccgtgaggcagctttggggaggacgggtaagaaaatgaccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctctcacaggggatcaccgtgaggcagctttggggaggacgggtaagaaaatgaccat 504

                         
Query: 305 ctagcaaaaggctc 318
           ||||||||||||||
Sbjct: 505 ctagcaaaaggctc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_i21.g1 MSMg01no295_i21.g1 CHROMAT_FILE:
MSMg01no295_i21.g1 PHD_FILE: MSMg01no295_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:31 2005
         (289 letters)



>mm_chr14_55354220_55354908
          Length = 689

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggctggagccaaagaatgcatttgagaatttccaagaacctgacatcggcctcgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttctggctggagccaaagaatgcatttgagaatttccaagaacctgacatcggcctcgtt 428

                                                                       
Query: 61  gctctggcattcctccagggctcctttgcctatggtggctggaacttccttaattatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctctggcattcctccagggctcctttgcctatggtggctggaacttccttaattatgtg 368

                                                                       
Query: 121 actgaggaacttgtggatccttacaagtgagtcaaacgaggttagctcttctgttcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 actgaggaacttgtggatccttacaagtgagtcaaacgaggttagctcttctgttcaccc 308

                                                                       
Query: 181 ttaggccgcacaggacccacctccggaaaaaggaaacacagactcacttcttgcccttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttaggccgcacaggacccacctccggaaaaaggaaacacagactcacttcttgcccttct 248

                                                          
Query: 241 ccagggacatgtcctggtctaccgtgaagccacggttgatgtcccag 287
           ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 ccagggacatgtcctggtctaccgtgaagccacagttgatgtcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)