BAC Information

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BAC

Clone NameMSMg01-296M01
Chromosome14 (Build37)
Map Location 82,725,588 - 82,726,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296M01.T7 (MSMg01no296_m01.b1)MSMg01-296M01.TJ (MSMg01no296_m01.g1)
ACCAG424273AG424274
length760752
length of high quality
(start - end)
236 (127 - 362)594 (76 - 669)
definitionCHROMAT_FILE: MSMg01no296_m01.b1 PHD_FILE: MSMg01no296_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:01 2005CHROMAT_FILE: MSMg01no296_m01.g1 PHD_FILE: MSMg01no296_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGGGATTTATTTTGTGTCTG
AGGGAAAGGAATGGTTATTTGCGCCGATGTTAAAGGATCTGTGCAATCAA
TGAGAGATGAGCCAATGATGAGGGAGCAGCAGAACTGTTGGAAAACTAGG
GTAAATCTGGGTGACCGGGTTTGCAGAAATTAAAATCTTCAATTAGCCTA
CCCCCATTCCTAGATTGTGGGTTCCCAGGGAAAGCCTTTAGGTGTGTGTG
ACTGAGGAAATAGGATGCAAGGAGTTGTAGGAGATCTAAATGATCTGTTA
TTGACAGGAGACTGTTTCTGGATCCACGCCCCCAGGCTGGGAGTAAGGCT
GGGGAGTGGGCTAGGGAGCCCCCGAAGAAAGAATATTTGATAACTGTCTG
TCTGATTACTGGCAGGGAATCCACCTCAGGCACTTTTGAAGTTGATTTCA
TTGAATATGCTCAATTTTTGTTTGTTTTTGGCTTGTTTGTTTGTTTTTGT
TCTGTTCCTTGCTATCTTGCCTACCCCCCTATACCTCTGCACCCTACCTT
ACACTCCCCCTGTTCCTGAACCTCTTTTATTACCCCTCTCTTTCCCCCTT
CATTATGTACCCTTCTTTTCCTTTGCCTGTTTGCCTGTTTTCCCTTCTTT
CTCTTTCTATCTCCTGCTTCCTTTCCTCTTTGATTTCACGCTTTTAACCT
TTTGCTCCCC
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGGGATTTATTTTGTGTCTGA
GGGAAAGGAATGGTTAGGGGTGGGGATGTTAAAGGATCTGTGCAATCAAT
GAGAGATGAGCCAATGATGAGGGAGCAGCAGAACTGTTGGAAAACTAGGG
TAAATCTGGGTGACCGGGTTTGCAGAAATTAAAATCTTCAATTAGCCTAC
CCCCATTCCTAGATTGTGGGTTCCCAGGGAAAGCCTTTAGGTGTGTGTGA
CTGAGGAAATAGGATGCAAGGAGTTGTAGGAGATCTAAATGATCTGTTAT
TGACAGGAGACTGCAACAGGATCTATGATAGAGGCTGGGAGTAAGGCTGG
GGAGTGGGCTAGGGAGGGGATGAAGAATGAATATTTGATAACTGTCTGTC
TGATTACTGGCAGGGAATCCACCTCAGGCACTTTTGAAGTTGATTTCATT
GAAGATGCTCAATTTTTGTTTGTTTTTGGTTTGTTTGTTTGTTTTGTTTT
GTTTCTTGGAGCATGAAATACCAACATAGACCTCTGAGTAATACAGAGAC
TCATCATGTTCCTGATATAGGAAATATACCTTTTCTTCCCACTTTATAAT
GAATAGTTATTCTTTGTAGGTTGCTGTATTAGTCAGGGTTTCTATTCCTG
CACAAACATTCATGACCAAGAAGCAAGTTGAGGAGGAAAGGGTTTATTCG
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_m01.g1 MSMg01no296_m01.g1 CHROMAT_FILE:
MSMg01no296_m01.g1 PHD_FILE: MSMg01no296_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:02 2005
         (594 letters)



>mm_chr14_82725286_82726279
          Length = 994

 Score = 1089 bits (563), Expect = 0.0
 Identities = 584/591 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   cagggatttattttgtgtctgagggaaaggaatggttaggggtggggatgttaaaggatc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 cagggatttattttgtgtctgagggaaaggaatggttaggggtggggatgttaaaggatc 834

                                                                       
Query: 64  tgtgcaatcaatgagagatgagccaatgatgagggagcagcagaactgttggaaaactag 123
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgtgcaatcaatgagagatgggccaatgatgagggagcagcagaactgttggaaaactag 774

                                                                       
Query: 124 ggtaaatctgggtgaccgggtttgcagaaattaaaatcttcaattagcctacccccattc 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 773 ggtaaatctgggtgaccgggtttgcagaaatgaaaatcttcaattagcctacccccattc 714

                                                                       
Query: 184 ctagattgtgggttcccagggaaagcctttaggtgtgtgtgactgaggaaataggatgca 243
           ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 713 ctagactgttggttcccagggaaagcctttaggtgtgtgtgactgagaaaataggatgca 654

                                                                       
Query: 244 aggagttgtaggagatctaaatgatctgttattgacaggagactgcaacaggatctatga 303
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 653 tggagttgtaggagatctaaatgatctgttattgacaggaggctgcaacaggatctatga 594

                                                                       
Query: 304 tagaggctgggagtaaggctggggagtgggctagggaggggatgaagaatgaatatttga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tagaggctgggagtaaggctggggagtgggctagggaggggatgaagaatgaatatttga 534

                                                                       
Query: 364 taactgtctgtctgattactggcagggaatccacctcaggcacttttgaagttgatttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 taactgtctgtctgattactggcagggaatccacctcaggcacttttgaagttgatttca 474

                                                                       
Query: 424 ttgaagatgctcaatttttgtttgtttttggtttgtttgtttgttttgttttgtttcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttgaagatgctcaatttttgtttgtttttggtttgtttgtttgttttgttttgtttcttg 414

                                                                       
Query: 484 gagcatgaaataccaacatagacctctgagtaatacagagactcatcatgttcctgatat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagcatgaaataccaacatagacctctgagtaatacagagactcatcatgttcctgatat 354

                                                              
Query: 544 aggaaatataccttttcttcccactttataatgaatagttattctttgtag 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aggaaatataccttttcttcccactttataatgaatagttattctttgtag 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)