Query= MSMg01no297_l04.b1 MSMg01no297_l04.b1 CHROMAT_FILE:
MSMg01no297_l04.b1 PHD_FILE: MSMg01no297_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:12 2005
(250 letters)
>mm_chr14_102265023_102265673
Length = 651
Score = 377 bits (195), Expect = e-109
Identities = 235/249 (94%), Gaps = 5/249 (2%)
Strand = Plus / Plus
Query: 1 ctttgagcacagtctcagagctggagagatatgtacccttcagagtgatggttcagtgtt 60
|||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||
Sbjct: 201 ctttgagcacggtctcagagctggagagatacatacccttcagagggatggttcagtctt 260
Query: 61 ccagtgcactgcatctcgaaatgaagaatggcttgataaggattccattggaggcaatat 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccagtgcactgcatcttgaaatgaagaatggcttgataaggattccattggaggtgatat 320
Query: 121 ttg-ccc--cagcatctccctttgttgaggaagtgctcttcgtggtttagtaactgtgtt 177
||| ||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttgaccctgca-catctccctttgttgaggaagtgctcttagtggtttagtaactgtgtt 379
Query: 178 tgggtgtgttttatgatatgaaggataagaatgcactagttgattctcagatcccttgtc 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 380 tgggtgtgttttatgatatgaaggataagaatgcactagttgattctcagatcc-ttgtc 438
Query: 238 taactctca 246
|||||||||
Sbjct: 439 taactctca 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 651
Length adjustment: 9
Effective length of query: 241
Effective length of database: 642
Effective search space: 154722
Effective search space used: 154722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no297_l04.g1 MSMg01no297_l04.g1 CHROMAT_FILE:
MSMg01no297_l04.g1 PHD_FILE: MSMg01no297_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:12 2005
(599 letters)
>mm_chr14_102453525_102454523
Length = 999
Score = 1023 bits (529), Expect = 0.0
Identities = 532/533 (99%)
Strand = Plus / Minus
Query: 67 gccaacagaatataattatccttcaaaacaagagcaatcaagggggctaatacaactttg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 gccaacagaatataattatccttcaaaacaagagcaatcaagggggctaatacaactttg 940
Query: 127 aagtatgtgattgtgtgacacagaacacagagatgacttcatccctttaaaccagtaaca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aagtatgtgattgtgtgacacagaacacagagatgacttcatccctttaaaccagtaaca 880
Query: 187 ctgattgaaagctttctgagagcagagatattccgtgtgtccctgtctgctctcccctct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ctgattgaaagctttctgagagcagagatattccgtgtgtccctgtctgctctcccctct 820
Query: 247 gctttgaatggcagctagcatactatgtactaaatatataagttttttaaatttgtaaat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gctttgaatggcagctagcatactatgtactaaatatataagttttttaaatttgtaaat 760
Query: 307 aagttaatattattatattcaattaatagagaatttatacaaataaccacactactgata 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aagttaatattattatattcaattaatagagaatttatacaaataaccacactactgata 700
Query: 367 ttctagaaaaccaccaaaaatgggaacagaattgtttgtctagaaccagacatagcactc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttctagaaaaccaccaaaaatgggaacagaattgtttgtctagaaccagacatagcactc 640
Query: 427 aagcatcttctcagaaaaagcaagctgtctttcccattatattgtaagcaatacgcggca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 aagcatcttctcagaaaaagcaagctgtctttcccattatattgtaagcaatacgcgcca 580
Query: 487 agcacagctttccaatgctttaattagtagctaaacaccactttggttctattacagtga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agcacagctttccaatgctttaattagtagctaaacaccactttggttctattacagtga 520
Query: 547 agagacagcatgaccatggcaactcttataaaaggaagactgaggctggctta 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agagacagcatgaccatggcaactcttataaaaggaagactgaggctggctta 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
