BAC Information

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BAC

Clone NameMSMg01-298P07
Chromosome14 (Build37)
Map Location 122,657,640 - 122,658,224
singlet/doubletsinglet
Overlap geneClybl
Upstream geneFarp1, Stk24, Slc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, 1700108J01Rik
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P07.T7 (MSMg01no298_p07.b1)MSMg01-298P07.TJ (MSMg01no298_p07.g1)
ACCAG425863AG425864
length694702
length of high quality
(start - end)
604 (20 - 623)248 (51 - 298)
definitionCHROMAT_FILE: MSMg01no298_p07.b1 PHD_FILE: MSMg01no298_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:44 2005CHROMAT_FILE: MSMg01no298_p07.g1 PHD_FILE: MSMg01no298_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTTTTCAAGAGGATCCGCGGAATTCTTTCTTTCGAGTTGCACTAGA
AAATACAAATTAAATGGCAGGGCTTCTGTCTAAATATCCAGGAAGGCTAG
GTAGGCTGTTCTGGAACACACTCAAATCATTGGCATCTAGAATATTGAGT
CCGCTGAGTGGCGGTAAGATAGTCACTGTGGTAATTAGGATGAGGCTTCC
AACACTTTCCCAAGTCCCATGCTCACCGAGGAAAAGGTAAACTCACAGGA
ACAGGGGAAGATTTGAAAGAGAAAGAAAACTTAAAACTTTTTATTGCCAG
AAGCTGAAAACAACCCCTGTAAATAAACAGCAAAGAGAACTCTTGTTAGC
CCAGGCAGTCAGAGCACCAAGGAGCTTGCCTAGGAGCAGCCGTGGATTTA
ATAAAAAAGGATTTTGGTCAAAGGGCCAAAGTGCAGGCGAGCTTCTACTG
CTTAAGAGATGTAGGTAAGACTTTTCACTAGGGTTGGAGGAGGAGGCAGG
GGACAAACCCGGGGAGATAAAATGCTACTTTACACAACAATGTAGACAGC
ATTTAGGCCACATGCAAATTCCTCCACAGAGCTTTCAAATGGAATGCATT
TTACTACTCCGGATAGCTAATTATTACACCAGTCTAATAAGAATGCTCGT
TAATCACCCTCCGCCTCCTGGGTCATTTCAACCTTGTTCTTTAN
TGGCGGCCGCCTGTTCAAAAAATTTAGGTGAACTATAGATTTTTCACGCG
GAATTCCTGTTTGGGGACCCAAAAGGGAATTGGAAAACGGTAATGTGGAA
ACCAAAGCTAGCTGGCATCATTTCTTGTCCTGTCTCTCTGTTGAGAAAGT
TCAGGCCTTAACTGAAGTCCTGATTGGGATGGTTTGAATGGCTGGCTGAA
TTAAGGTCATCTGGGATCAGCAGTCTTTCCTGACGCTGTTCTGGAAGCAA
GTCTCTGAAAACAGCATCAGTTTAGGCAGGATCAATCAGTGAGCTGTAAC
ATCTTGTCTCAGCGTCTTAGCATCCCTGGGGGTGAATCCTGTCAGGGCTG
CCCTCTTGGTGTTTCATTCTGTAATATATAAACCTCACAATCAGCATTTA
GTTCTAGAAAGACATTTGTATGGAATGTGCATGGTGCACAGATCGGTCAG
GATGATTTTTTGCTCTTTGAGTAGGTGAAAGGCAACTGCCTTTTTTTCTT
TTTAGTTTGATCATATAATCCAACTGTAATATAATTTTTCTAGGTTATGC
TGACTAAATAATCCCTCTCTATCAGTCCTGATTTATAAGCCATTTCATTT
GCTTTTCTATGCTGGGAAGAGACACCATATCCAAGGTAACTTACTATGGA
AAGCGCTCACTTTTAACACCTCACGATTTCAGAATTGGCTCATGACCACC
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p07.b1 MSMg01no298_p07.b1 CHROMAT_FILE:
MSMg01no298_p07.b1 PHD_FILE: MSMg01no298_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:44 2005
         (604 letters)



>mm_chr14_122657423_122658424
          Length = 1002

 Score = 1031 bits (533), Expect = 0.0
 Identities = 573/587 (97%), Gaps = 2/587 (0%)
 Strand = Plus / Minus

                                                                       
Query: 18  cgagttgcactagaaaatacaaattaaatggcagggcttctgtctaaatatccaggaagg 77
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cgagttgcactagaaaatccaaattaaatggcagggcttctgtctaaatatccaggaagg 743

                                                                       
Query: 78  ctaggtaggctgttctggaacacactcaaatcattggcatctagaatattgagtccgctg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctaggtaggctgttctggaacacactcaaatcattggcatctagaatattgagtccgctg 683

                                                                       
Query: 138 agtggcggtaagatagtcactgtggtaattaggatgaggcttccaacactttcccaagtc 197
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 682 agtggcggttagatagtcactgtggtaattaggatgaagcttccaacactttcccaagtc 623

                                                                       
Query: 198 ccatgctcaccgaggaaaaggtaaactcacaggaacaggggaagatttgaaagagaaaga 257
           |||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 622 ccatgctcgccgaggaaaaggtaaactcacaggaacaggggaagatttgaa--agaaaga 565

                                                                       
Query: 258 aaacttaaaactttttattgccagaagctgaaaacaacccctgtaaataaacagcaaaga 317
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaacttaaaactttttaaagccagaagctgaaaacaacccctgtaaataaacagcaaaga 505

                                                                       
Query: 318 gaactcttgttagcccaggcagtcagagcaccaaggagcttgcctaggagcagccgtgga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaactcttgttagcccaggcagtcagagcaccaaggagcttgcctaggagcagccgtgga 445

                                                                       
Query: 378 tttaataaaaaaggattttggtcaaagggccaaagtgcaggcgagcttctactgcttaag 437
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 444 tttaataaaaaaggattttggtcaaagggccaaaatgcaggcaagcttctactgcttaag 385

                                                                       
Query: 438 agatgtaggtaagacttttcactagggttggaggaggaggcaggggacaaacccggggag 497
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 384 agatgtaggtaagacttttcactatggttggaggaggaggcaggggacaaaccgggggag 325

                                                                       
Query: 498 ataaaatgctactttacacaacaatgtagacagcatttaggccacatgcaaattcctcca 557
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 ataaaatgctactttacacaacaatgtagacagtatttaggccacatgcaaattcctcca 265

                                                          
Query: 558 cagagctttcaaatggaatgcattttactactccggatagctaatta 604
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 cagagctttcaaatggaatgcaatttactactccggatagctaatta 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1002
Length adjustment: 10
Effective length of query: 594
Effective length of database: 992
Effective search space:   589248
Effective search space used:   589248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)