BAC Information

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BAC

Clone NameMSMg01-300F24
Chromosome14 (Build37)
Map Location 30,802,555 - 30,802,845
singlet/doubletsinglet
Overlap geneActr8
Upstream geneCacna2d3, Lrtm1, Ppia-ps15, EG665431, Selk
Downstream geneIl17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300F24.T7 (MSMg01no300_f24.b1)MSMg01-300F24.TJ (MSMg01no300_f24.g1)
ACCAG426879AG426880
length739739
length of high quality
(start - end)
234 (131 - 364)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no300_f24.b1 PHD_FILE: MSMg01no300_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:30 2005CHROMAT_FILE: MSMg01no300_f24.g1 PHD_FILE: MSMg01no300_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGGCTTGTATTTTGGACATAGTAAAAAGAAGCCACAGTCCAAC
GGGCTCTGACATTTCTGAATTTCTGCAAGAATTTGGGGGCATAGCTCAGC
GCTAGAGTGTTTGCCTTTCTTAAAAGGCCCAAGGTTCAAACCCCAGTTCT
GAAAAAGATGAGGAAAAATGGTTAAGGACCTGAAGGAAACTCTGGAGCAC
AAATATCTCCTCAAAAAGGTGAAATGACATAGGACAGCAGTGCACGCCTT
TAATCCCAGCACTCTGGAAGCAGAGGCAGGTGGATCTCTGTGGGTTCAAG
GCCAGCCTGGTCTACTTTTGTTTTCCCGCACCGCCTGGGCTACACAGTGA
ATTCCAGGACAGCCTGGGCTACACAGTGAATTCCAGGACAGCCTGGGCTA
CACAGTGAATTCCAGGACAGCCTGGGCTACACAGTGAATTCCAGGACAGC
CTGGGCTACACAGTGAATTCCAGGACAGCCTGGGCTACACAGAGAAACTC
TGACTCAAAACAAAACAAAACAAAAACAAAATTTTTAAAATCTGGGGATT
TTTTTTAAAGTTAAGTGACACAAAGAAGATTTCAAATAAAAGCCAAGAAA
ATTGATCAACAAATCTACACTATAATAAATGGTAAACGAAACTCTTCATG
CTAAAAGAAAAATAATTTTAGGTAGAAACAAATACCTAN
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAACTGCTGTGCCATCTCCTCA
TCCCCATCAGAACATGGTTGATGGCCACTGTTCTTGCTAGGGAGTCATAA
AGTAGATGGTAAGCATTTACTTGACATTTGCTTTGAGAGTCTCACATGGT
GCCCTGCTACTCATCCAGGTGGATTGTGGGTTTTGTAGTCTGTTGTGCAA
TCCCTTTCCCAGAAGGAATGCTGGCCACCGTGACATGGAGCACCTGCCTG
ATGGCCTTTGTCTGGGGAAGACTGAAGCTCCACCCTTTGCCTAAGCATTC
TCCCTTCCATGCCCAGTTTTTTTTGGCCCTCCCCCCCCCAGCAACCTTTG
GGATCGTGGGACAGAAGATGACCACTCTGCAACACAAGACCCAGGGAGAC
CCTGAGGATCCCCATGATGAGCACTACCTGCTGGCCACCCAGAGCAAGCA
AGAACAGGTACGCCACAGCTCGGCTGTCACAGGTGACTTCTCCTCGCCTT
ACCCAGAGTTAACAGGTCCTTACTTTTTTTGTTTGTTTGTTTTGTTTTGC
ATTTTGAGACAGGGTTTCTCTGTATCGCCCTGGCTGTCCTGGAACTCACT
TTGTAGACCAGGCTGGTCTCAAACTCAGAAATCCTCCTGCTTCTGCCTCC
CAAGAGCTGGGATTAAAAGTGTGCAACACCTCGCCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_f24.g1 MSMg01no300_f24.g1 CHROMAT_FILE:
MSMg01no300_f24.g1 PHD_FILE: MSMg01no300_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:30 2005
         (291 letters)



>mm_chr14_30802355_30803045
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaactgctgtgccatctcctcatccccatcagaacatggttgatggccactgttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaactgctgtgccatctcctcatccccatcagaacatggttgatggccactgttctt 260

                                                                       
Query: 61  gctagggagtcataaagtagatggtaagcatttacttgacatttgctttgagagtctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagggagtcataaagtagatggtaagcatttacttgacatttgctttgagagtctcac 320

                                                                       
Query: 121 atggtgccctgctactcatccaggtggattgtgggttttgtagtctgttgtgcaatccct 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtgccctgctactcatcctggtggattgtgggttttgtagtctgttgtgcaatccct 380

                                                                       
Query: 181 ttcccagaaggaatgctggccaccgtgacatggagcacctgcctgatggcctttgtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccagaaggaatgctggccaccgtgacatggagcacctgcctgatggcctttgtctgg 440

                                                              
Query: 241 ggaagactgaagctccaccctttgcctaagcattctcccttccatgcccag 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagactgaagctccaccctttgcctaagcattctcccttccatgcccag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)