BAC Information

Click to search

BAC

Clone NameMSMg01-300G21
Chromosome14 (Build37)
Map Location 28,528,514 - 28,529,055
singlet/doubletsinglet
Overlap geneErc2
Upstream gene4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300G21.T7 (MSMg01no300_g21.b1)MSMg01-300G21.TJ (MSMg01no300_g21.g1)
ACCAG426920AG426921
length759761
length of high quality
(start - end)
543 (68 - 610)584 (70 - 653)
definitionCHROMAT_FILE: MSMg01no300_g21.b1 PHD_FILE: MSMg01no300_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:35 2005CHROMAT_FILE: MSMg01no300_g21.g1 PHD_FILE: MSMg01no300_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCA
AGGATCATTTCCAGACTGACCTTGGCTGCCAGTGTGATCAGGTGATTAAA
ATTAACCTCAGTGTTCTAACGCTGAACACCAATGGGCCCTTTACCCTTGA
CTTGGCTCACATGGTGGCATAAATAGGCATTGTAGGGGAGAAGAAAGGCT
GGCCTCTGGGCGTCAGAGTGGGTTTGATTAGCAGCTGTATCAATTCAAGC
TCTGAGGACATGGGACAGTCAGCAGCTAGGACTAACAAGCACTGGCCTAC
AGACTCAAGTACAAGTCAAAGTCCAAGCGCTCCATCACACCAGGCTCTAA
GCAGATCCATGCTACCATTGAGCAGGGTGGTGTGAGAGCCATTGTTTTGG
GCAATACCTGTGGCCCTTACATTGGTCAGAGGGGTAGGGAAGACATTATG
AAGGGGGAAAAGAATCTAAATATCACCTCCTACAGCAGGAACTTCACAGG
CTGCAATAATATGAATCCCCAGATATTGTCACGACCCTGGCCATAGTGAG
AACCATTAAGTTCACCCCAGAAAGGGACTCACTGACAGGCAAGGATGGCG
AGATATTCAAGCTGGATGCAGATGAGTGTCCTCTTTGGACTTTGACTTAG
ATTGAGCGGTTCTGCCTGGGCAGTGCCCTTATCACGATGAAGGAGCTGCA
GCAATAACGACGGTCCAGGTTTGACTGTCCTGTCCCTCTCGAGACCCCGC
TGGGCTTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACTTGAAAAAATGTTCAACACCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGAGTGCAGGCTTGTACAATCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATA
TTAGCCCCAAACCTAGGATACTCAAGATATAAGATATAATTTGCTAAACA
CATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCC
TTAGATTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_g21.b1 MSMg01no300_g21.b1 CHROMAT_FILE:
MSMg01no300_g21.b1 PHD_FILE: MSMg01no300_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:35 2005
         (543 letters)



>mm_chr14_28528314_28529255
          Length = 942

 Score =  942 bits (487), Expect = 0.0
 Identities = 529/543 (97%), Gaps = 1/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccttggctgccagtgtgatcaggtgattaaaattaacctcagtgttctaacgctgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 201 gaccttggctgccagtgtgatcaggtgattaaaattaacctcagtgacctaaagctgaac 260

                                                                       
Query: 61  accaatgggccctttacccttgacttggctcacatggtggcataaataggcattgtaggg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 accaatgggccctttacccttgacttggctcacatggtggcaaaaataggcattgtaggg 320

                                                                       
Query: 121 gagaagaaaggctggcctctgggcgtcagagtgggtttgattagcagctgtatcaattca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 gagaagaaaggctggcctctgggcgtcagagtgggtttgactagcagctgtatcaattca 380

                                                                       
Query: 181 agctctgaggacatgggacagtcagcagctaggactaacaagcactggcctacagactca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctctgagggcatgggacagtcagcagctaggactaacaagcactggcctacagactca 440

                                                                       
Query: 241 agtacaagtcaaagtccaagcgctccatcacaccaggctctaagcagatccatgctacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 agtacaagtcaaagtccaagcgctccatcacaccaggctctaagcagatccatgccacca 500

                                                                       
Query: 301 ttgagcagggtggtgtgagagccattgttttgggcaatacctgtggcccttacattggtc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagcagggtggtgtgagaggcattgttttgggcaatacctgtggcccttacattggtc 560

                                                                       
Query: 361 agaggggtagggaagacattatgaagggggaaaagaatctaaatatcacctcctacagca 420
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtggggtagggaagacattacgaagggggaaaagaatctaaatatcacctcctacagca 620

                                                                       
Query: 421 ggaacttcacaggctgcaataatatgaatccccagatattgtcacgaccctggccatagt 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 ggaacttcacaggctgcaataatatgaatccccagagattgtcacgaccctggccatagt 680

                                                                       
Query: 481 gagaaccattaagttcaccccagaaagggactcactgacaggcaaggatggcgagatatt 540
           ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 681 gagaaccat-aagttcaccccagaaagtgactcactgacaggcaaggatggcaagatatt 739

              
Query: 541 caa 543
           |||
Sbjct: 740 caa 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space:   496756
Effective search space used:   496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)